Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq1991 165 3e-36 seq809 113 1e-20 >seq1991 Length=9072 Score = 165 bits (182), Expect = 3e-36 Identities = 238/330 (72%), Gaps = 17/330 (5%) Strand=Plus/Plus Query 21198 GCCTGCTGGTGGTGGACTACCTGCAGCTGCTGGAGAGCTCCGGCAAGTCCA-CTCGCAC- 21255 ||||| | ||||| ||||||||||||||| || |||| || ||| | ||| || Sbjct 5005 GCCTGATCGTGGTCGACTACCTGCAGCTGATGAGCGGCTCGGGGTCGTCGAGCTCCGACA 5064 Query 21256 --CGAG-----GACGTCAGCGACATGTCCCGCCAGTGC---AAGCTGCTGGCGATGGAGC 21305 || | || | |||| || ||||| | || ||| ||||||| | ||||| Sbjct 5065 ACCGGGCCACCGAACTGGGCGAAATTTCCCG---GGGCCTGAAGATGCTGGCCAAGGAGC 5121 Query 21306 TTGGTATCCCCG-TGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAAC 21364 | | || |||| |||||| ||||||||||||||||||||| |||||||||| | || Sbjct 5122 T-GCAATGCCCGGTGATCGCGCTGTCGCAGCTCAACCGCTCGGTGGAGCAGCGCACCGAC 5180 Query 21365 AAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTG 21424 ||||| || |||||| ||||||||||| || || || ||||||||||| || || | Sbjct 5181 AAGCGGCCCATGATGAGCGACCTGCGCGAATCGGGCGCCATCGAGCAGGATGCGGACATC 5240 Query 21425 ATCATGTTCGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCT 21484 ||||||||| | ||||||||||| |||| || ||| | | || | | | | || Sbjct 5241 ATCATGTTCATCTACCGCGACGACTACTACAACAAGGACAGCAAGGAGCCGAACATCGCC 5300 Query 21485 GAGTTGATCATCGCGAAGCACCGCAACGGC 21514 ||| ||||||||| ||||| || |||||| Sbjct 5301 GAGGTGATCATCGGCAAGCAGCGTAACGGC 5330 >seq809 Length=68953 Score = 113 bits (124), Expect = 1e-20 Identities = 161/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 21292 GCTGGCGATGGAGCTTGGTATCCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGA 21351 |||||||| |||| | ||| ||||||| ||| || || ||||| |||||| |||| || Sbjct 59692 GCTGGCGAAGGAGATCGGTTGCCCCGTGGTCGCCCTCTCACAGCTTAACCGCGCCCTCGA 59633 Query 21352 GCAGCGGCCGAACAAGCGACCGATGATGTCGG--ACCTGCGCGAGTCCGGGGCGATCGAG 21409 | ||| | | || || || | || ||| ||||||| || |||||||| | ||| Sbjct 59632 GAGCCGGGTGGATAAACGTCCCA--ATAACGGTGACCTGCGGGATTCCGGGGCATTGGAG 59575 Query 21410 CAGGACGCCGATGTGATCATGTTCGTGTACCGCGACGAGGTCTACCACCCGGATACCCAG 21469 ||||| || |||||||||||||| || ||||| || ||||| ||| || | | || | Sbjct 59574 CAGGATGCTGATGTGATCATGTTTGTCTACCGTGATGAGGTTTACGACGAACACAGCCCG 59515 Query 21470 TACCGCGGCGTGGCTGAGTTGATCATCGCGAAGCACCGCAACGGC 21514 | ||| | || || |||| |||| ||||| ||||| ||| Sbjct 59514 GATAAAGGCATTGCCGAACTGATTATCGGCAAGCAGCGCAATGGC 59470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157101524931698