Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_016765.1 Length=54024 Score E Sequences producing significant alignments: (Bits) Value seq1398 248 3e-61 seq1991 95.1 4e-15 >seq1398 Length=15916 Score = 248 bits (274), Expect = 3e-61 Identities = 378/530 (71%), Gaps = 15/530 (3%) Strand=Plus/Minus Query 3684 CTGGCGATAACCCGGACTCCACGATCACCATCTACGAGCCGATTGGCTACGACTGGTGGA 3743 ||| || | |||||| | | |||||||||||||||| | ||| ||| | |||||||||| Sbjct 14322 CTGCCGTTGACCCGGCCACATCGATCACCATCTACGACCAGATCGGCGAGGACTGGTGGA 14263 Query 3744 CCGGTGAAGGTGTCACGGCAAAACGCATTGCTGGCGCTCTGCGCTCCATCGGCAACGATG 3803 | |||||||| ||||| || ||||| || || || ||| |||||||| || | Sbjct 14262 CAGGTGAAGGCACTACGGCTAAGCGCATCAGCGGAGCCCTTCGCGCCATCGGCGACAAGC 14203 Query 3804 TCGATGTGACCGTGAACATCAACAGCCCCGGCGGCGACGTATTCGAAGGCCTGGCCATTT 3863 || || || ||||||||||||| ||||||||||| ||||| |||||||| || | Sbjct 14202 ACGCC---ACGGTCTACATCAACAGCCCTGGCGGCGACGTGTTCGAGGGCCTGGCGATCT 14146 Query 3864 ACAACCTGCTGCGCGAGCACAAGGGCAAG-GTCACGGTGAACATCATCGGCCTGGCTGCC 3922 |||||||||||||||||||| || || | || || || || | ||||| |||| ||| Sbjct 14145 ACAACCTGCTGCGCGAGCACGCGG-CAGGCGTGACCGTCAAGGTGGTCGGCGTGGCGGCC 14087 Query 3923 TCTGCCGCCTCTTTCATCGCCATGGCGGGGGATGAAATCCGCATCGGCCGCGCCGCCTTC 3982 || || | ||||||||||||||||| | | | ||| |||| |||| Sbjct 14086 AGCGCGGCGGCGATCATCGCCATGGCGGGGTCGCGGGTGGAGGTTGCCCGAGCCGGCTTC 14027 Query 3983 CTGATGATCCATAACGCCTGG-CTGATCGCCATGGGTAATCGGAATGATCTCCGTGAGAT 4041 ||||||||||| || | ||| ||| | ||||| || |||| | | || | || |||| Sbjct 14026 CTGATGATCCACAATTCGTGGACTG-TGGCCATCGGCAATCAGCACGACATGCGCGAGAC 13968 Query 4042 AGCCGATTGGCTGGAGCCATTCGACATGACGCTGGCTGACATTTACGC-ACAGCGCACGG 4100 ||||| ||||||||||| ||||||| ||| | ||||| || | ||| || | ||| Sbjct 13967 CGCCGACTGGCTGGAGCCGTTCGACAAGACCCAAGCTGATATATTCGCGGCAAAGACCGG 13908 Query 4101 AAATCGACA---TCGACGACATCGTGAAACAGATGGACGCCGAGACCTGGATCGGCGGGC 4157 ||||| || | |||| || | ||||||| ||||| ||||||||||| | Sbjct 13907 ----CGACAAGCCTGAGAAGATCGCAAAGATGCTGGACGCTGAGACGTGGATCGGCGGCC 13852 Query 4158 GCGAAGCCGTCGACAAAGGGTGGGCAGATGCCTTCCTGGAGTCCGACGAG 4207 || || ||||||| |||| |||||| | | ||| | |||||||| Sbjct 13851 AGGATGCGGTCGACATGGGGTTCGCAGATTCGCTGCTGCCGGCCGACGAG 13802 Score = 86.0 bits (94), Expect = 2e-12 Identities = 380/576 (66%), Gaps = 33/576 (6%) Strand=Plus/Minus Query 4918 TCGAACTCCGTCGAGTACGTCCGCGAGACCGGC-TTCGTCAACAATGCCGCTCCTGTTTC 4976 |||||| || ||||||||||||| || || | ||| ||||| ||| | || Sbjct 13145 TCGAACGCCATCGAGTACGTCCGTGA-ACTGCTGTTCACGAACAACGCCAATGTGGTGAG 13087 Query 4977 GGAA--GGCACCCAGAAGCCATACTCCGACCTGACCTTCGAACTGGAAAACGCGCCGGTT 5034 ||| |||| ||| |||| | ||||| | || ||||| ||||| ||| || || Sbjct 13086 CGAACTGGCAACCA--AGCCTCAGTCCGATATCACGTTCGAGCTGGAGTCCGCACCCGTG 13029 Query 5035 CGCACCATCGCACACCTG-TTCAAGG---CAAGTCGCCAGATCCTGGACGACGCTTCGGC 5090 |||||||| ||| | ||| | |||| ||| | |||| ||||| | Sbjct 13028 GCGACCATCGCCCACTGGATTCGCGCTTCCAAG----CAGGTGCTGGCTGACGCCCCCAT 12973 Query 5091 CTTGCAGAGCTACATCGATGCGCGCGCTCGT-TACGGCCTGATGCTGGTCGAAGAAGGTC 5149 ||||| |||||||| | ||| || | |||||||||| |||| ||||| | Sbjct 12972 GCTGCAGTCGTACATCGACGGCCGC-CTGATGTACGGCCTGAAGCTGAAGGAAGAGCAGC 12914 Query 5150 AACTGCTCTACGGGAACGGGACCGGCGCCAATCTGCACGGCATCATTCCGCAGGCACAGG 5209 | ||||| | || ||| |||| || ||| |||||||| | ||||| || | Sbjct 12913 AGCTGCTGAAGGGCTCCGGCGTCGGCCTGAACCTGAACGGCATCTACACCCAGGC-CACG 12855 Query 5210 CCT-ACGCG--CCGCCGAGTGGCGTAGTGGTAACCGCCGAGCAGCGAATCGACCGCATCC 5266 ||| ||| | || | | ||| | ||| | | |||||| || ||||||||| | | Sbjct 12854 CCTTACGTGAACCCCGGCGTGAC--AGT--TCAG-GCCGAGACACGCATCGACCGCCTGC 12800 Query 5267 GCCTGGCGATCCTTCAGGCGCAACTGGCCGAGTTCCCGGCCAGCGGTATCGTGCTCAACC 5326 ||||||| || || || | | ||| |||||| | || ||| ||||| |||||| Sbjct 12799 GCCTGGCCATGCTGCAAGTGTCGCTGTCCGAGTACGACACCGACGGCATCGTCATCAACC 12740 Query 5327 CCATCGACTGGGC-GCTGATCGAGCTGACCAAGGACGCCGAGAACCGTTACATCATCGGC 5385 |||| |||||||| ||| ||||||||||||||| | | || || ||| | || || Sbjct 12739 CCATTGACTGGGCTGCT-ATCGAGCTGACCAAGACCACGGACAATGCGTACCTGTTC-GC 12682 Query 5386 A--GCCCGCAGAACGGCACCACTCCGACCCTCTGGCGTCTGCCGGTGGTGGAAACCCAGG 5443 | |||| | | | | | | | || ||||| ||| | | || ||||| | || || | Sbjct 12681 ATCGCCCACCGGCCAG-ATCGCGCCCACCCTGTGGGGCCGCCCCGTGGTCGCCACGCAAG 12623 Query 5444 CCAT-CACTCAGGACGAGTTCCTGACCGGTGCGTTC 5478 |||| || || |||| |||||| |||||| ||| Sbjct 12622 CCATGGACGCA-AACGACTTCCTGGTCGGTGCATTC 12588 >seq1991 Length=9072 Score = 95.1 bits (104), Expect = 4e-15 Identities = 121/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 45498 TGAAGCTGTTGGCAAGGGAGATTGGGTGTCCTGTGCTTCCCCTCTGCCAGCTCAACCGAG 45557 ||||| || |||| | |||| | || || ||| | | || | ||||||||||| Sbjct 5101 TGAAGATGCTGGCCAAGGAGCTGCAATGCCCGGTGATCGCGCTGTCGCAGCTCAACCGCT 5160 Query 45558 -GTTGCGAGTCTCGCCCCGACAAGCGTCCGGTCCTCAGCGACCTGCGCGAGTCCGGCGCC 45616 | || ||| ||| |||||||||| || | | |||||||||||||| || |||||| Sbjct 5161 CGGTG-GAGCAGCGCACCGACAAGCGGCCCATGATGAGCGACCTGCGCGAATCGGGCGCC 5219 Query 45617 ATTGAGCAAGACGCCGACATCGTCATGTTCGTGTACCGCGATGA 45660 || ||||| || || |||||| |||||||| | |||||||| || Sbjct 5220 ATCGAGCAGGATGCGGACATCATCATGTTCATCTACCGCGACGA 5263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172745441166724