Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_017974.1 Length=149273 Score E Sequences producing significant alignments: (Bits) Value seq888 264 1e-65 >seq888 Length=58548 Score = 264 bits (292), Expect = 1e-65 Identities = 291/383 (76%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 118114 CATGATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTA 118173 || ||||||||| || || | || || || | |||||| |||||||| |||||||| Sbjct 22459 CACGATGTCGTCGAACACAACAGAGGGGTCGTTGACGATGTTGCGGATGATGTGGGTGTA 22518 Query 118174 TGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCGACCCATGTTTCCAGGGTTGT 118233 ||||| |||||||| || || |||||||| ||||||| ||| || ||||| | | Sbjct 22519 CGAGCGCGAGTGGATCGTTTCGGAAAACGCCCAGGTCTCGATCCACGTCTCCAGC-TCGG 22577 Query 118234 GTCG-GACACGATCGGGAGCAGAACTGCAT--TCGGCCCACGGCCCTGTACAGAATCCAG 118290 | | ||||| | ||| || |||| ||| | || | || ||||| | || ||||| Sbjct 22578 GCAGCGACACCAGCGGCAG--GAACGCCATGTTGGGACTGCGCCCCTGGATGGAGTCCAG 22635 Query 118291 AAGGATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCAT 118350 || ||||||| |||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 22636 CAGCGTCTGGTATTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGGTCCGGCAGGTTCTG 22695 Query 118351 GTAGTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTG 118410 ||| |||| ||||| | || | || ||||||||||| ||||||||||| | || || Sbjct 22696 GTAATCGAGCCGGTCCTGCGTGATGTCTACTTCTTCCGGGCGCCAGAAGAAGGAGAGCTG 22755 Query 118411 CTTCTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGG 118470 ||| ||||||||||||||||| ||| || ||||||||||| ||||| | |||||| Sbjct 22756 CTTTTCGATCAGCTTCTCGAAGATGGGGTACTTCTGCTGGTCGTAGCGTGCCACGTTCAC 22815 Query 118471 TGTCTCGCCGAGGAACATCGGCT 118493 | || ||||| |||||| |||| Sbjct 22816 CGGCTGGCCGAAGAACATGGGCT 22838 Score = 141 bits (156), Expect = 9e-29 Identities = 679/1057 (64%), Gaps = 63/1057 (6%) Strand=Plus/Plus Query 119140 CTTGAAGGAAATCGCATCACGAGGTGGCTCAAAACCATTCGTGGAGTTAGTGATCTGGCT 119199 ||||| || | | || | || || ||||| | || || |||| || | ||||||||| Sbjct 23243 CTTGACAGACACCACACCGCGGGGAGGCTCGATGCCGTTGGTGGCATTGGCGATCTGGCT 23302 Query 119200 GGATGTCTCGCAAGGCATCATCGTGGACAGCGTGGAGTTACGCAGGCCATGAATCGCGAT 119259 || || || | ||||| | || || || ||||||||| |||| ||| || | ||| Sbjct 23303 CGACGTTTCCGAGGGCATGAGCGCGGTCAACGTGGAGTTGCGCAAGCCGTGGGCCTGGAT 23362 Query 119260 ATCGACACGCAGCTTTTCCCAGTCCATCTTCAGTTCCGCAGTGTGGAGAGCATCCACCTC 119319 ||| | |||||| ||||||||| | || ||| | | | | || | || | || Sbjct 23363 GTCGGCGCGCAGCGCTTCCCAGTCGAGCTGCAGGGCTTCGGCGCAGACGGTGTCGAGGTC 23422 Query 119320 TTTT-TTGTAACGGTCGATCGGCAGAATGCCCTGAGAGTAAGTTGTCTCGTGGAAGAGAT 119378 ||| ||||| |||||||||||| ||||| | || || || |||| ||| | Sbjct 23423 CTTTCTTGTACGTGTCGATCGGCAGCATGCCGGCGGCATA-GTGGTTTCGTCGAATGCTT 23481 Query 119379 CACATTTGCCCAGTTCTTTTGCCAGGTCAACCGACGCTTCCAGTAGGTAATACTGGAATG 119438 | | | | || | | || | || ||||||| || | ||| ||||| | | Sbjct 23482 CGTAAGGTCTGAACTCGTGCGAGAGCTGCACTGACGCTTTGAGCATGTAGTACTG-ATCG 23540 Query 119439 CTTCAGCCAGTTCGTGAACAGCGTTAGCTGCACGAGGGTCGCTGTACTTCATC----CCG 119494 |||| || | ||| |||| || || |||| | ||||| | ||| | | Sbjct 23541 CTTCGA--AGGTGGTGT---GCGTCAG--GC-CGAGTG-CGCTGC-CGTCAGAGTAACGG 23590 Query 119495 CG------CTTCGCCAGGTAGTACGCGAGGTTGGTCCAGCCAATCCCCAGTGTACGGCGC 119548 | ||| ||||||||||| ||| |||| | ||| | ||||| | |||||| Sbjct 23591 CTGTTGTTCTTGGCCAGGTAGTAGGCGTAGTTGATGACGCCCACGCCCAGCGAGCGGCGC 23650 Query 119549 AGCTTGGTCTTCTCT---GCCGCCAGAACCGGGTAGTTCTGATAGTCCAGCAGTCGGTCC 119605 | ||| | | || ||| || ||||||| ||| ||||| ||||| || Sbjct 23651 TTGTCGGTGGCCACGCGCGCAGCCTTGACGGGGTAGTCCTGGTAGTCGAGCAGGGCATCG 23710 Query 119606 AGAGCACGAAC---CAGTGTACGGACAGGCTCACGCATGTCTTCCAGCTTCTCGATCTTG 119662 || ||||| || ||| || |||||||| | | || || || ||| || | | | Sbjct 23711 AGCGCACGCACGATCAG-GT-CGGACAGGTTTTC-CAGCTCATCGAGCGATTCCAGCGCG 23767 Query 119663 CCAAGGTTAATGGCAGACAGAGTACACAGGGCTACCTCGCCCGGGTCTTCTGGATCGTTA 119722 || ||||| | ||| ||||| || ||||| || | |||||| || ||| ||| || Sbjct 23768 CCCAGGTTGAAGGCCGACAGCGTGCACAGCGCGATCTCGCC---GTTTTC---ATCATTG 23821 Query 119723 ATGTCGTTGATCGGATGCGTCGGCAGCGCGATCTCCATACACAGGTTGGACTGCTTCACC 119782 || ||||| | ||| | || |||||| ||||||||| |||||||||||||| ||| Sbjct 23822 ATATCGTTCAGCGGCTTGGTGGGCAGCAGGATCTCCATGCACAGGTTGGACTGGCGCACG 23881 Query 119783 GGGGCCTGTTTAGGGTCAAACGGGCTGTTGGTATTACAGTGGTCAACGTGCTGAACATAA 119842 || |||| | | ||| |||||||||| || || |||||||| |||| ||| | || Sbjct 23882 GGTGCCTTCTGCGCGTCGAACGGGCTGTGCGTGTTGCAGTGGTCCACGTTCTGGATGTAG 23941 Query 119843 ATACGACCAGTTTGTGAACGCTCCTGCCCAAAGACAGAGAATGCGTCCGCCGCAGGGATA 119902 || || || || | ||||||||| | | ||||| ||| | || || || Sbjct 23942 ATGCGGCCGGTGCTGGCGCGCTCCTGCATCATCAGCGAGAACAGTTCCACGGCCGGCATG 24001 Query 119903 GACTTCTTCGCCACGGAAGGAT-CTGCT--TCCAGTTCCTCGTAAAGCTGTTGGAATTTC 119959 | ||| | ||||| || ||||| | | || ||||| || | | ||| | Sbjct 24002 GTGCGCTTGCGAATGGAAGCATCCTGCTCGTACTGT---TCGTAGAGGCGCTCGAACTCG 24058 Query 119960 TCCTGATCAGAGAAGAAATATTCGTACAGCTTACCGCCAGCCA---CGTTCGGATGGAAC 120016 | ||| || | |||||| |||||||| ||| | || ||| ||| |||| Sbjct 24059 TTCTGGTCGGCGAAGAACGCGTCGTACAG------GCCGGGCACATCGTGCGGCGAGAAC 24112 Query 120017 AACGTGATGTTCTTGCCCTGCTGGAGGCG--GGTATAAAGCAGCTTG---TTGATCTGGA 120071 | ||||||||||| | || ||||| |||| ||| || |||||||| | Sbjct 24113 AGCGTGATGTTCTGGTTCTTGATCAGGCGCTGGTA-----CAGGGTGCGATTGATCTGCA 24167 Query 120072 GGCCGTAGTCCACATGGCGAGCACGAGTGCTCTCGGTGCCACGGTTGTTCTTCAGAACGA 120131 || ||||||| ||||||| || | ||| || ||||||||||| || || | Sbjct 24168 CACCATAGTCCAAATGGCGAATGCGGTTTTCCTCCACACCGCGGTTGTTCTTGAGCACCA 24227 Query 120132 TCAGGCTCTCAAAATCCCAGTGCCACATCGGGTAGAA 120168 ||| || | ||| |||||||| |||||||| Sbjct 24228 GCAGCGATTCCACTTCCAGGTGCCACAGGGGGTAGAA 24264 Score = 104 bits (114), Expect = 2e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 117821 TTCAGCATATACTGAGTGCCGGACAAATGCAAGGCTTCATCACGGGCAATCAGTTCAATA 117880 ||||||| | ||| || |||| | |||| || || ||||| || || || || Sbjct 22133 TTCAGCAAGTGCTGCGTACCGGTAAGGTGCAGCGCCTCGTCACGCGCGATGAGGCGGATG 22192 Query 117881 ATGTTGGTGTTGCCCAGCATTACCCCGCGCTCGCCGAACGCAAATGAGCAGGCGAAGCTC 117940 || |||| |||||| ||| | | ||||||| |||| || || ||||| ||||||||| Sbjct 22193 ATCTTGGCGTTGCCTTCCATGAGCTTGCGCTCGGCGAAGGCGAACGAGCACGCGAAGCTC 22252 Query 117941 ACGTAGAAGCGGATCGCTTCCAGTGCGTTGATATTGTGCAGGCACAGGTACA 117992 ||||||||||||||||| || || ||| | || |||||||||||||| Sbjct 22253 ACGTAGAAGCGGATCGCCTCAAGGATGTTCACGTTCATCAGGCACAGGTACA 22304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477517203944760