Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq818 158 4e-34 seq476 125 2e-24 >seq818 Length=58372 Score = 158 bits (174), Expect = 4e-34 Identities = 225/316 (71%), Gaps = 3/316 (1%) Strand=Plus/Minus Query 25973 TGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTCC---CACTTGCGGGTTT 26029 |||| ||||| || ||| | || ||| ||||| | | ||| || || ||||| Sbjct 56289 TGACGACAATCTCGGTGATATAACGCGTTACGCCTGCATCGTCCTGCCAGTTCCGGGTAC 56230 Query 26030 TCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCG 26089 || ||||| || |||||||||||||| || |||| || ||||| || ||||| |||| Sbjct 56229 GCAACTGCCCTTCGATGTAAACCTGTGATCCCTTCTGGAGATACTCTCCGGCGATTTCCG 56170 Query 26090 CTACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCT 26149 | | || || |||| || || ||||||||||| || |||| ||| || ||||||| Sbjct 56169 CGAGTTTCCCGAACAAGACCACACGATGCCATTCCGTGTTTTCTCTCTGCTCACCGGTCT 56110 Query 26150 GCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAG 26209 | || || ||| |||| ||||| || | || | ||||| || ||||||||||| | Sbjct 56109 GTTTGTCACGCCATGTTTCAGAGGTTGCCAGCGTCAAATTGGCTACCGCGCCGCCATTCG 56050 Query 26210 GCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTACGC 26269 |||| ||||| | ||| ||| | | ||||| ||| || || | | ||| | ||||||| Sbjct 56049 GCATATAACGCACCTCGGGAGCCTGCCCCAAGTTGCCAACCAATGTCACTCTGTTTACGC 55990 Query 26270 CGCGTGATGCCATTAT 26285 | || |||||| || Sbjct 55989 CACGCTCTGCCATGAT 55974 >seq476 Length=182463 Score = 125 bits (138), Expect = 2e-24 Identities = 202/290 (70%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 25981 ATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTCC---CACTTGCGGGTTTTCAGTTGC 26037 ||||| |||||||| || || ||||||||| ||| ||||||||||| ||| Sbjct 52938 ATTTCGGTGGTGTAACGGTCCTGGCCGTCCTTGTCCTGCCACTTGCGGGTGCGCAGGGAG 52879 Query 26038 CCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTG 26097 || || | || ||||| || || |||||||| ||| |||||||| || | |||| Sbjct 52878 CCTTCCACATACACCTGGCTGCCCTTGCGCAGGTACTGGCCGGCGATCTCGGCGAGCTTG 52819 Query 26098 CCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCG 26157 || || | ||| ||||| |||||||| || | || |||||||||||| ||| ||| Sbjct 52818 CCGAAGAACACCACGCGGTGCCATTCGGTGGCCTCGCGCTTTTCGCCGGTGGCCTTGTCG 52759 Query 26158 TTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAA 26217 |||| | || | ||| || | || |||||| || ||| |||| | || ||| Sbjct 52758 CGCCAGTTGTCGGTGGTGGCCAGCGTGATGTTGCAGATCGCGTCGCCGCTCGGGGCGTAG 52699 Query 26218 CGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTAC 26267 ||| | || || || || ||||| || |||| ||| || || || || || Sbjct 52698 CGGGTTTCGGGGTCCTTGCCCAGATTGCCGATAAGAATCACCTTGTTGAC 52649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159808572003662