Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_018282.1 Length=61167 Score E Sequences producing significant alignments: (Bits) Value seq538 149 2e-31 >seq538 Length=154069 Score = 149 bits (164), Expect = 2e-31 Identities = 487/739 (66%), Gaps = 42/739 (6%) Strand=Plus/Plus Query 6561 TACCGCGAAGTGGACGCCCGGGCGCTGTGGGACGCGATCATGCGCGGGACCTGGGATTGG 6620 |||||| | ||| |||||| | |||||||| | |||||||| |||| || Sbjct 117869 TACCGCAAGGTGCGCGCCCGCGACCTGTGGGATCAGGTCATGCGCTCCACCTACGACCAC 117928 Query 6621 GCGGAGCCGGGCGTGCTGTTCATCGACGCGATCAACCGCATGAACAACCTCTGGTACTGC 6680 || || |||||| | |||||| ||||| || ||| |||||||| | |||||| Sbjct 117929 GCCGAACCGGGCATCCTGTTCCTCGACCGCATGAACAAGGACAACAACCTTTACTACTGC 117988 Query 6681 GAGACCATCGCCGCCACCAACCCCTGCGGTGAGCAACCCCTCCCGCCCTACGGTGCCTGT 6740 |||||||||| |||||||||||||||| ||||| ||||| ||| ||||||| ||| Sbjct 117989 GAGACCATCGAGGCCACCAACCCCTGCGCCGAGCAGCCCCTGCCGTCCTACGGCTGCTGC 118048 Query 6741 CTCCTGGGCTCCTTCAACCTGGTCAAGTACATCTACAAGGACGGC----GCG----GGCC 6792 ||||||||| ||||||| |||| | ||||||| | || |||| Sbjct 118049 TGCCTGGGCTCGATCAACCTCACGCTGTACGT---GAAGGACGCCTTCTCCGACAAGGCC 118105 Query 6793 -GCTTCTCCTTCGATTGGGACCAG-TACCGCGAGGACATCCCGCAA--GTGGTCCGGGCG 6848 ||||| ||||| || | | | || || ||| || || | |||| | Sbjct 118106 AGCTTCGACTTCG-------CCGGCTTCGGCAAGACCAT--CGAAACCTCGATCCGCATG 118156 Query 6849 ATGGACAACGTGGTTGATCGCGCGATCTACCCGCTGCCGCAGCAGAAGCAGGAAGCCAAG 6908 | ||||||||| | || | | || ||||| |||||| | |||||| || Sbjct 118157 CTCGACAACGTGCTCGAAGCCACCCACTGGCCGCTCGAACAGCAGCACGCCGAAGCCCAG 118216 Query 6909 GACAAGCGCCGCATGGGCCTCGGGATCACCGGCCTGGCCAACGCCGCCGAAGCC---CTG 6965 |||||||||| | |||||||| |||||||||| | ||||| ||| | ||| ||| Sbjct 118217 TCCAAGCGCCGCGTCGGCCTCGGCTTCACCGGCCTCGGCAACG-CGCTG--GCCATGCTG 118273 Query 6966 GGCCATGAG-TACGGTTCGCCCGCCTTCCTCGCCTT--CGAGGCGGAGGTGCTGGACACG 7022 ||| || | |||| | || || ||| | | | ||| | | | | || Sbjct 118274 CGCC-TGCGCTACGACACCGACGAAGCCCGCGCGATGGCCACCAGGATCT-CCGAATAC- 118330 Query 7023 CTGCGTGATGAGTCCTACCTGGCCAGCGCCCACATCGCCAAGGTCAAGGGCTCCTTCCCG 7082 |||| || ||||||| |||||| || | | ||||||||| ||| |||||||| Sbjct 118331 ATGCGCGACCAGTCCTATCTGGCCTCCGTCGAACTCGCCAAGGAACGCGGCGCCTTCCCG 118390 Query 7083 AAGTTCGACAAGGACAAGTACCTC-CAG--GGCCAGTTCATCAAGACCCTCCGCGAGGAC 7139 |||| || || |||||| | | ||| | ||| | | ||| | | || Sbjct 118391 CTGTTCAACGCCGATCTCTACCTCTCCGGCGGCAACTTCGCCTCGCGCCTGCCGGCCGAG 118450 Query 7140 GTGCGGGACGCCATCGCCAAATACGGCATCCGCAACTCCCACCTCACTTCCATCGCCCCG 7199 ||| |||| ||| ||| ||||| | |||||||| ||||| ||||||||||| Sbjct 118451 GTGAAGGACAAGATCCGCAAGCACGGCCTGCGCAACTCGCACCTGCTCTCCATCGCCCCC 118510 Query 7200 ACCGGGACCATCAGCCTG---TGCGCCGACAACGTCAGCTCCGGGATTGAGCCGGTGTTC 7256 ||||| |||||||||||| | ||||||||||| | | ||| || |||||| |||| Sbjct 118511 ACCGGCACCATCAGCCTGGCCTTCGCCGACAACGCCTCCAACGGCATCGAGCCGCCGTTC 118570 Query 7257 GCCTACAGCTTCGACCGCA 7275 | |||| || | ||||| Sbjct 118571 TCATACACCTACACCCGCA 118589 Score = 127 bits (140), Expect = 8e-25 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 6153 GGCGGCGGGATCGGCTATGACTTCAGCACCCTCCGTCCTCGCGGCGACCTGATCCGCAAG 6212 |||||||| ||||||| |||||| | || |||| || |||| || | ||| Sbjct 117497 GGCGGCGGCGTCGGCTACGACTTCTCCTCCATCCGCCCCAAGGGCGCGATGGTGCGCGGC 117556 Query 6213 CTCCAGTCCCACTCCTCCGGCCCCATCAGCTTCATGCACATCTTCGACGCGATC-TGCAA 6271 ||||||| || |||||||||| || || ||||| | | |||||| || || ||| | Sbjct 117557 ACCCAGTCCAACGCCTCCGGCCCGGTCTCCTACATGCGCGTGTTCGAC-CGCTCCTGCGA 117615 Query 6272 GTGCGTCGCCTCCTCCGGCCATCGCCGCGGAGCCCAGATGGGGGTGATGCGCGTGGACCA 6331 | ||||| ||| ||||| |||||||| ||||||||||| ||| ||||| ||||| Sbjct 117616 GACCGTCGAATCCGCCGGCTCCCGCCGCGGCGCCCAGATGGGCGTGCTGCGCTGCGACCA 117675 Query 6332 TCCCGACATTGAGGAGTTCATTCACGCCAAGCAACCCGG 6370 || ||||| ||||| ||||| ||||||||| | | ||| Sbjct 117676 CCCGGACATCGAGGAATTCATCCACGCCAAGGACCACGG 117714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195601749955186