Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq888 545 2e-150 >seq888 Length=58548 Score = 545 bits (604), Expect = 2e-150 Identities = 1215/1796 (68%), Gaps = 63/1796 (4%) Strand=Plus/Minus Query 68289 GCAAGTATCTCGTTCAAAACCGTGTAACTG-GCGCTATCTACGAAGGGCCACAGCAACTC 68347 ||||||| || || || ||||| || || |||| |||||||| | || ||| ||| Sbjct 24719 GCAAGTACCTGGTGCAGAACCGGGTGACAAAGCGC-ATCTACGAGAGCCCGCAGATGCTC 24661 Query 68348 TACATGCTGGTCGGCATGTGCCTGTTCCAGAATTGGGAAGATGGCTGCGCCGGTAAGACG 68407 ||| ||||||| | ||||||||||||| || | || ||| | | || Sbjct 24660 TACGTGCTGGTGGCCATGTGCCTGTTCGCCAAGTACCCAG----------CGGAACGCCG 24611 Query 68408 CGTCTGGAGATGGTTAAGGGCTTCTACGATGTGACCAGTACA---TTCAAGTTGTCTCTG 68464 | ||||| || ||| |||||||||| | || | | |||||| | || ||| Sbjct 24610 C--CTGGACTATGTCAAGCGCTTCTACGAAG---CCGTTTCGCGCTTCAAGATTTCGCTG 24556 Query 68465 CCAACGCCAATTATGGCCGGCGTGCGCACCCCTACTCGCCAGTTCTCCAGCTGCGTGCTG 68524 || || || |||||| ||||||||||||| || | ||||||||| | ||||||||| Sbjct 24555 CCTACCCCCATTATGTCCGGCGTGCGCACGCCCATGCGCCAGTTCAGCTCGTGCGTGCTG 24496 Query 68525 ATTGAAGCTGCTGATAGTCTGAAAGGGATTAGCGCTGCGTCTTCCGCAATCATCGACTAC 68584 || ||| | || || ||| | || || | ||| | | ||| ||| || | ||| Sbjct 24495 ATCGAATGCGACGACAGCCTGGATGGCATCAACGCCACCACCAGCGCCATCGTCAAGTAC 24436 Query 68585 GTGTCACGTCGCGCGGGCATTGGTAT---TGGCTTTGGGCGTCTGCGTGCGCTGGGCAGT 68641 ||||| | ||||| ||||| || || |||| || ||| | ||||| ||||||| Sbjct 24435 GTGTCGCAGCGCGCTGGCATCGGCATCAATGGC---GGCCGTATCCGTGCCGTGGGCAGC 24379 Query 68642 GAGATCCGCAATGGCGAGGCCACCCACACTGGCGTTTTTCCATTCCTGAAACACTTCCAG 68701 || ||||| ||||| || ||||| ||| | || ||| | || |||||| Sbjct 24378 GAAATCCGGGGCGGCGAAGCGCAGCACACGGGCTGCCTGCCCTTCTTCAAGATGTTCCAG 24319 Query 68702 ACGGCGGTGAAATCCTGCTCTCAGGGCGGTGTTCGCGGCGGCGCTGCTACAGCGTTCTAT 68761 | || || || |||||||| ||||||||||| || || || || || || |||||| Sbjct 24318 GCTGCCGTCAAGTCCTGCTCGCAGGGCGGTGTGCGGGGAGGGGCGGCCACGCTGTTCTAC 24259 Query 68762 CCGATCTGGCACTTGGAAGTTGAAAGTCTGCTGGTGCTGAAAAACAACCGTGGCATTGAA 68821 || | |||||| ||||||| ||| ||||||||||| || |||||||| || | || Sbjct 24258 CCCCTGTGGCACCTGGAAGTGGAATCGCTGCTGGTGCTCAAGAACAACCGCGGTGTGGAG 24199 Query 68822 GAGAACCGCGTTCGTCATCTCGACTATGGCGTGATGATCAACCGTCTGATGTATCGCCGC 68881 || |||||| |||| ||| | |||||||| ||| |||||| || |||| | ||| Sbjct 24198 GAAAACCGCATTCGCCATTTGGACTATGGTGTGCAGATCAATCGCACCCTGTACCAGCGC 24139 Query 68882 CTGGTGCGCAACGAAAACATTACGCTGTTCAGCCCACACGATGTGCCGGGCCTGTACGAC 68941 ||| | ||| | ||||| ||||||||| || ||||||||||| |||||||||||| Sbjct 24138 CTGATCAAGAACCAGAACATCACGCTGTTCTCGCCGCACGATGTGCCCGGCCTGTACGAC 24079 Query 68942 GCGTTCTTTGTTGATCAGGACAAGTTCGAAGAGCTGTACCTGAAGTACGAAGCCGACGAG 69001 |||||||| | || ||| || ||||||| || ||| ||||||| || | Sbjct 24078 GCGTTCTTCGCCGACCAGAACGAGTTCGAGCGCCTCTACGAACAGTACGAGCAGGATGCT 24019 Query 69002 AGCATCCGTAAGAAATCTATCCCGGCCGTCGACCTGTTCTCTACGCTGATGCAGGAGCGT 69061 ||| || ||| | || |||||||| || |||||||| | ||||||||||||| Sbjct 24018 TCCATTCGCAAGCGCACCATGCCGGCCGTGGAACTGTTCTCGCTGATGATGCAGGAGCGC 23959 Query 69062 GCCTCCACTGGTCGTGTTTATATTGCCAACGTCGACCACATGAACGATCACGGCGCATTC 69121 ||| ||| || || | || || ||||| |||||| ||| ||| || | ||| Sbjct 23958 GCCAGCACCGGCCGCATCTACATCCAGAACGTGGACCACTGCAACACGCACAGCCCGTTC 23899 Query 69122 GTTCCGGAAATTGCACCGGTACACCAGTCCAATCTCTGTATGGAGATCACGCTACCGACC 69181 | || | | ||||| || | ||||||||| || || ||||||||| ||| || ||| Sbjct 23898 GACGCGCAGAAGGCACCCGTGCGCCAGTCCAACCTGTGCATGGAGATCCTGCTGCCCACC 23839 Query 69182 AAGCCACTG---GCGTTCACTGACGATCCGAACGGGGAAATCGCGCTTTGCACCCTGTCT 69238 ||||| ||| | ||| ||| || ||||| || |||||||| ||||| ||||| Sbjct 23838 AAGCCGCTGAACGATATCAATGATGA---AAACGGCGAGATCGCGCTGTGCACGCTGTCG 23782 Query 69239 GCGTTCAACCTGGGCGCGATCCGCACGCTGGACTCACTGAAAGACGTG-GCGTTTTACGC 69297 || ||||||||||||||| | |||| || ||| || || || || | | Sbjct 23781 GCCTTCAACCTGGGCGCGCTGGAATCGCTCGATGAGCTGGAAAACCTGTCCGACCTGATC 23722 Query 69298 TGTGGCGGCACTGGACTCTCTGCTCGACTATCAGGACTACCC---TATGGCTGC-TGCAG 69353 ||| || || || | ||||||||||| ||||||||||| | |||||| || Sbjct 23721 -GTGCGTGCGCTCGATGCCCTGCTCGACTACCAGGACTACCCCGTCAAGGCTGCGCGCGT 23663 Query 69354 AAATCCCGGCTAAAGCTCGTCGTAGTCTGGGTATTGGCGTGACCAACTTTGCTTACTATC 69413 ||| | ||| || || ||||| | ||||| | ||||| || ||||| | Sbjct 23662 GGCCACCGAC--AAG--CGCCGCTCGCTGGGCGTGGGCGTCATCAACTACGCCTACTACC 23607 Query 69414 TGGCGAAGAACGGCTTTAACTACTCTGACGCTGC-GGGCAACCAG-CTGGTGCATGAGAC 69471 |||| |||||| | |||||||||| || | ||| | | ||| ||| || Sbjct 23606 TGGCCAAGAACAACAGCCGTTACTCTGACG--GCAGCGCACTCGGCCTGACGCACACCAC 23549 Query 69472 CTTCGAAGCCATTCAGTACTACCTGCTCGATGCG--AGCTGCCGACTGGCCGAAGCGAAA 69529 ||||||||| | |||||||||| ||||| | ||| || ||| | || | | | | Sbjct 23548 CTTCGAAGCGA-TCAGTACTACATGCTCAAAGCGTCAG-TGCAG-CTCTCGCACGAGTTC 23492 Query 69530 GGTGCATGTGACTGGTTCTCCCACACCAAATACGCACAGGGCCAGCTGCCAGTCGACCAC 69589 | | | || ||| | | ||| | || || ||| |||||| ||||| Sbjct 23491 AGACCTTACGAAGCATTCGACGAAACC-ACTATGCCGCCGGCATGCTGCCGATCGACACG 23433 Query 69590 TATCGCAAA--ACGCTGGATACCAAC-CCGGAGACATCTTTCGAGCTGAAAATGCCGTGG 69646 || ||| || || || ||| | || || | | | |||| | ||| Sbjct 23432 TACAAGAAAGGAC-CTCGACACCGTCTGCGCCGA-AGCCCTGCAGCTCGA------CTGG 23381 Query 69647 GAAGAGCTGCGTGGCCGTATCCGTGAGCATGGTCTGCGTAACTCAACTCTGACCGCTCAA 69706 |||| |||||| | | |||| | || || |||| ||||| || ||||||| | Sbjct 23380 GAAGCGCTGCGCGCCGACATCCAGGCCCACGGCTTGCGCAACTCCACGTTGACCGCGCTC 23321 Query 69707 ATGCCGTGTGAGACGTCCAGCCAGATCACCAACTCCACCAATGGTATTGAGCCGCCCCGC 69766 ||||| | || ||||| ||||||||| |||| ||||||| || || ||||| |||||| Sbjct 23320 ATGCCCTCGGAAACGTCGAGCCAGATCGCCAATGCCACCAACGGCATCGAGCCTCCCCGC 23261 Query 69767 GGCCCGGTATCCGTGAAGTCTTCCAAAGACGGCATCGTGAAGATGGTCGTTCCAGACTTC 69826 || ||| || || ||| || || || |||||| || | |||||| || || | Sbjct 23260 GGTGTGGTGTCTGTCAAGCAGTCGAAGGATGGCATCCTGCGGCAGGTCGTGCCGGAACTG 23201 Query 69827 GCTCAACTGAAAGACCAGTACGAGTACCTGTGGGATATGCCGGATAACCGCGGCTATCTG 69886 | | ||||| | ||||||||||| |||||| | ||||| | ||| |||||| || Sbjct 23200 GACCGCCTGAAGGGCCAGTACGAGTTGCTGTGGCAGATGCCCAACAACGACGGCTACCTC 23141 Query 69887 ACTAAGGTGGCCATCATTCAGAAGTTCTTCGATCAGGCCATCTCTGCGAACACCAACTAC 69946 | || | | | || ||||||||| |||| ||| ||||||||||||||||||||||| Sbjct 23140 AAGCTCGTCGGCGTGATGCAGAAGTTCGTCGACCAGTCCATCTCTGCGAACACCAACTAC 23081 Query 69947 GACCCGACTCGCTTCCCTGGCGACAAGGTTCCAATGATGAAGCTGCTGGAAGATCTGCTG 70006 |||||| |||| | | | || | ||||| ||| |||||||| | ||||||||| Sbjct 23080 GACCCGCAGCGCTACGCAGACGGCCGTGTTCCCATGCAACAGCTGCTGAAGGATCTGCTG 23021 Query 70007 TTTGCGTATCAGCAAGGTGTGAAGACGCTTTATTACCACAACACGCGTGATGGCGC 70062 || || ||| || |||||||| | || ||||||||||| || |||||||| Sbjct 23020 CAGGCCTACAAGCTGGGCGTGAAGACCTTGTACTACCACAACACCCGCGATGGCGC 22965 Score = 253 bits (280), Expect = 1e-62 Identities = 288/386 (75%), Gaps = 3/386 (1%) Strand=Plus/Minus Query 70306 AAGGAACCTATGTTCCTCGGCCAGTCTGTCAACGTAGCACGCTACGATCAGCAAAAGTAC 70365 ||||| || |||||| |||||||| | || ||||| ||||||||||| ||||| |||||| Sbjct 22842 AAGGAGCCCATGTTCTTCGGCCAGCCGGTGAACGTGGCACGCTACGACCAGCAGAAGTAC 22783 Query 70366 CGTGACTTCGAAAAGCTGATTGAAAAACAACTTTCGTTCTTCTGGCGCCCTGAAGAAGTC 70425 | |||||| |||||||| ||||| || || || |||||||||||||| |||||||| Sbjct 22782 CCCATCTTCGAGAAGCTGATCGAAAAGCAGCTCTCCTTCTTCTGGCGCCCGGAAGAAGTA 22723 Query 70426 GACATTACCACTGACCGCATCGACTTCAATACCAAGCTGCAAGAGCACGAGCGCCATATT 70485 ||||| || ||||| |||| | | | | | |||| || |||||| || || Sbjct 22722 GACATCACGCAGGACCGGCTCGATTACCAGAAC---CTGCCGGACCACGAGAAGCACATC 22666 Query 70486 TTCCTGAGCAACCTGCGTTACCAGACGCTGTTGGATTCCGTTCAGGGTCGCAGTCCTAAC 70545 ||| | ||||||||| |||||||||||| |||| ||| | ||||| |||||||| ||| Sbjct 22665 TTCATCAGCAACCTGAAATACCAGACGCTGCTGGACTCCATCCAGGGGCGCAGTCCCAAC 22606 Query 70546 GCAACACTGCTGCCGCTGATCTCCATTCCTGAGCTGGAGACATGGGTCGAGACCTGGTCG 70605 | | ||||||||| | || | || ||||||||||| ||| ||||||||||| || Sbjct 22605 ATGGCGTTCCTGCCGCTGGTGTCGCTGCCCGAGCTGGAGACGTGGATCGAGACCTGGGCG 22546 Query 70606 TTCTCCGAGACGATTCACAGCCGCAGCTATACGCACATTATCCGCGGTATGGTGGATGAC 70665 || ||||| ||||| ||| ||| || || ||||| |||||| || || | ||| Sbjct 22545 TTTTCCGAAACGATCCACTCGCGCTCGTACACCCACATCATCCGCAACATCGTCAACGAC 22486 Query 70666 CCTAGCATCGTTTTCGACGGCATCGT 70691 || | || ||||||| |||||| Sbjct 22485 CCCTCTGTTGTGTTCGACGACATCGT 22460 Score = 120 bits (132), Expect = 2e-22 Identities = 96/116 (83%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 70879 CTGGAGGCGATTCGCTTCTACGTGAGCTTTGCGTGTACGTTCGCCTTTGGTGAGCGGAAG 70938 || |||||||| ||||||||||||||||| ||||| |||||||||| | ||||| ||| Sbjct 22275 CTTGAGGCGATCCGCTTCTACGTGAGCTTCGCGTGCTCGTTCGCCTTCGCCGAGCGCAAG 22216 Query 70939 CTGCTGGAGGGCAACACGAAGATCATGCGCTTTATCGCGCGCGACGAGGCTCTACA 70994 || |||| |||||| | |||||||| ||| | |||||||| |||||||| || || Sbjct 22215 CTCATGGAAGGCAACGCCAAGATCATCCGCCTCATCGCGCGTGACGAGGCGCTGCA 22160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330412842895020