Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq888 140 4e-28 >seq888 Length=58548 Score = 140 bits (154), Expect = 4e-28 Identities = 340/512 (66%), Gaps = 6/512 (1%) Strand=Plus/Minus Query 40720 CCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTA 40779 ||||| || |||||| | || ||||| || || | ||| |||||| | || || | Sbjct 24555 CCTACCCCCATTATGTCCGGCGTGCGCACGCCCATGCGCCAGTTCAGCTCGTGCGTGCTG 24496 Query 40780 ATCGAATCGGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTCCGCGATCGTGAAGTAT 40839 ||||||| | || |||| | | ||||| || ||| ||||| ||||| Sbjct 24495 ATCGAATGCGACGACAGCCTGGATGGCATCAACGCCACCACCAGCGCCATCGTCAAGTAC 24436 Query 40840 ATCTCTCAACGTGCTGGTATTGGTGTCAACGCCGGACACATTCGCGCTATGGGTTCAAAA 40899 | || || || ||||| || || |||| | ||| | || || || |||| || Sbjct 24435 GTGTCGCAGCGCGCTGGCATCGGCATCAATGGCGGCCGTATCCGTGCCGTGGGCAGCGAA 24376 Query 40900 ATCCGTGGTGGTGAAGCAGTACATACAGGCGTTATCCCGTTCTGGAAACACATTCAGACG 40959 ||||| || || ||||| || || ||| | || |||| || | ||| | Sbjct 24375 ATCCGGGGCGGCGAAGCGCAGCACACGGGCTGCCTGCCCTTCTTCAAGATGTTCCAGGCT 24316 Query 40960 GCGGTTAAATCCTGTTCCCAGGGCGGTGTTCGTGGTGGTGCAGCAACCCTGTATTATCCG 41019 || || || ||||| || ||||||||||| || || || || || || |||| || || Sbjct 24315 GCCGTCAAGTCCTGCTCGCAGGGCGGTGTGCGGGGAGGGGCGGCCACGCTGTTCTACCCC 24256 Query 41020 ATCTGGCATCTTGAAGTTGAAAACCTGTTGGTTCTGAAAAATAACCGTGGCGTTGAAGAA 41079 | ||||| || ||||| ||| ||| |||| || || || ||||| || || || ||| Sbjct 24255 CTGTGGCACCTGGAAGTGGAATCGCTGCTGGTGCTCAAGAACAACCGCGGTGTGGAGGAA 24196 Query 41080 AACCGTATTCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTATAAGCGTTTA 41139 ||||| ||||| || |||| ||||| || ||| | || |||| |||| | Sbjct 24195 AACCGCATTCGCCATTTGGACTATGGTGTGCAGATCAATCGCACCCTGTACCAGCGCCTG 24136 Query 41140 ATCAATAACGATTACATCACTCTGTTCAGCCCTGACGTTGCGAACGATCGCCTGTATGAC 41199 ||||| ||| | ||||||| |||||| || ||| || | || ||||||| ||| Sbjct 24135 ATCAAGAACCAGAACATCACGCTGTTCTCGCCGCACGATGTGCCCG---GCCTGTACGAC 24079 Query 41200 GCGTTCTATCAAGCGGATCAGACTGAGTTTGA 41231 ||||||| || || || |||| ||||| || Sbjct 24078 GCGTTCT-TC--GCCGACCAGAACGAGTTCGA 24050 Score = 109 bits (120), Expect = 6e-19 Identities = 249/370 (67%), Gaps = 6/370 (2%) Strand=Plus/Minus Query 42946 GTTGCGCGATACGAAGAACAAAAGCATCGTGTGTTTGAAAATCTTACAGAAAAACAGTTA 43005 || || || ||||| | || ||| | | | || || || || | ||||| ||| | Sbjct 22809 GTGGCACGCTACGACCAGCAGAAGTACCCCATCTTCGAGAAGCTGATCGAAAAGCAGCTC 22750 Query 43006 TCCTTCTTTTGGCGTCCAGAAGAAATTGACTTATCGATCGACCGTATGCAGTACGCGAAA 43065 |||||||| ||||| || |||||| | ||| | || ||||| | | ||| ||| Sbjct 22749 TCCTTCTTCTGGCGCCCGGAAGAAGTAGACATCACGCAGGACCGGCTCGATTACCAGAAC 22690 Query 43066 ATGCCGGAACACGAAAAAATCATTTTCGATTCA--AACCTACAATATCAAACCCTGTTGG 43123 ||||||| ||||| || ||| ||| ||| ||||| |||| || || ||| ||| Sbjct 22689 CTGCCGGACCACGAGAAGCACATCTTCA--TCAGCAACCTGAAATACCAGACGCTGCTGG 22632 Query 43124 ATACCATTCAGGGACGCGGCCCTAACCTGGCTTTCCTCCCTATCGCTTCCGATGTCTCAA 43183 | |||| ||||| ||| | || ||| |||| ||||| || | | || | || | | Sbjct 22631 ACTCCATCCAGGGGCGCAGTCCCAACATGGCGTTCCTGCCGCTGGTGTC-GCTGCCCGAG 22573 Query 43184 -TGGAAACGTGGATCGAAACATGGGCGTTCAGTGAAACAACCCATAGCCGCAGTTACACG 43242 |||| ||||||||||| || |||||||| ||||| | ||| ||| ||||| Sbjct 22572 CTGGAGACGTGGATCGAGACCTGGGCGTTTTCCGAAACGATCCACTCGCGCTCGTACACC 22513 Query 43243 CACATTCAGCGCAACCTACACATCGACCCGTCGAAAGAGTTCGATAAGATTCTGCGCAAC 43302 ||||| |||||| | || |||||| || | |||||| | || |||||||| Sbjct 22512 CACATCATCCGCAACATCGTCAACGACCCCTCTGTTGTGTTCGACGACATCGTGCGCAAC 22453 Query 43303 GAAGCGATCA 43312 || ||||| Sbjct 22452 GAGCAGATCA 22443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570055701047160