Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_019925.1 Length=152427 Score E Sequences producing significant alignments: (Bits) Value seq888 104 2e-17 >seq888 Length=58548 Score = 104 bits (114), Expect = 2e-17 Identities = 281/425 (66%), Gaps = 4/425 (1%) Strand=Plus/Plus Query 51379 CAGGCGCTCAAACATCACGCGGTTGATCTGAATACCGTAGTCGATGCGACGTTCGCGGTT 51438 |||||||| ||| ||| |||||||| | ||| ||||| | | || |||||| Sbjct 24136 CAGGCGCTGGTACAGGGTGCGATTGATCTGCACACCATAGTCCAAATGGCGAATGCGGTT 24195 Query 51439 CTCTTCTGTTCCACGGTTGTTCTTCAGGACAACGACGTCATCGAACTGGTAG-TGCCACA 51497 || || || ||||||||||| || || | | | || ||| || ||||||| Sbjct 24196 TTCCTCCACACCGCGGTTGTTCTTGAGCACCAGCA-GCGATTCCACTTCCAGGTGCCACA 24254 Query 51498 GGGGGATGTACCCTGTCGCTGCACCGCCGCGAATGCCGCCCTGAGAGCACGACTTGAGCG 51557 ||||| | || || || || || || || | |||||||| ||||| ||||||| | Sbjct 24255 GGGGGTAGAACAGCGTGGCCGCCCCTCCCCGCACACCGCCCTGCGAGCAGGACTTGACGG 24314 Query 51558 CC-CCAGTGAGATACTTGATGAACGGGATCAGGCCTGTGTGAACCATCTCTCCGCCGCGA 51616 | || | | || ||||| ||| || | ||| ||||| | || ||||| || Sbjct 24315 CAGCCTGGAACAT-CTTGAAGAAGGGCAGGCAGCCCGTGTGCTGCGCTTCGCCGCCCCGG 24373 Query 51617 ATAGGACTACCAATACCACGGATTGCCCCGAAGTCGAAACCGATACCAGCGCGTTTTGAC 51676 || || || | ||||||| ||| | || ||||| |||||||| | ||| Sbjct 24374 ATTTCGCTGCCCACGGCACGGATACGGCCGCCATTGATGCCGATGCCAGCGCGCTGCGAC 24433 Query 51677 ACATAGTCAACGATGGTCTTGGCCGTTGCGTTGATAGAGTCCAGGGTGTCACCAGTCTTG 51736 || || | ||||||| ||| || |||||||| |||||| |||| | | | Sbjct 24434 ACGTACTTGACGATGGCGCTGGTGGTGGCGTTGATGCCATCCAGGCTGTCGTCGCATTCG 24493 Query 51737 ATCAACACACATGAGCTGAACTGACGGGTAGGAGTACGAACACCGGCCATGATCGGGGTT 51796 |||| ||| || ||||||||||| || | || || || || |||| ||| || ||||| Sbjct 24494 ATCAGCACGCACGAGCTGAACTGGCGCATGGGCGTGCGCACGCCGGACATAATGGGGGTA 24553 Query 51797 GGAAG 51801 || || Sbjct 24554 GGCAG 24558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487609403801640