Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq4651 183 5e-41 seq4037 109 9e-19 >seq4651 Length=474197 Score = 183 bits (202), Expect = 5e-41 Identities = 184/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 ||||| || ||||| |||||||| ||| | |||||| || |||||||| || || Sbjct 350275 GACCGCACCGGCACCGGCACCCTCTCGGTCTTCGGCTGGCAGATGCGCTTCGATCTCGCC 350216 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 | ||||| |||||| |||| ||||| ||| | ||| |||||| |||||||| ||||| Sbjct 350215 GACGGTTTTCCGCTGCTCACCACCAAGAAGCTCCACACCCGCTCGATCATCCACGAGCTG 350156 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 ||||||||||| ||||| |||||||||| |||||| || |||||||| || ||| Sbjct 350155 CTGTGGTTCCTGCGCGGCGACACCAACATCCGGTATCTCAAGGACAACAAGGTTTCGATC 350096 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 ||||| || ||||| || || | || | || |||||||||||||| ||||| ||||| Sbjct 350095 TGGGACGAGTGGGCCGACGAGAACGGCGAGCTGGGCCCGGTGTACGGCAAGCAGTGGCG 350037 Score = 84.2 bits (92), Expect = 3e-11 Identities = 125/174 (72%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 123072 TGTCCTGTCAGCTGTATCAGCGCAGTGCTGACATGTTCCTAGGCGTACCGTTTAACATTG 123131 |||| || ||||| ||||||||||| || ||||| ||||| ||||| || || ||||| | Sbjct 349857 TGTCGTGCCAGCTCTATCAGCGCAGCGCCGACATCTTCCTGGGCGTTCCCTTCAACATCG 349798 Query 123132 CCTCTTACGCGCTCCTGATACACATGTTTGCCCAGCAG-GCCAATATG-GCAGTAGGTGA 123189 || ||||||||| | | ||| | |||||| | || || | || | || || Sbjct 349797 CCAGCTACGCGCTCTTCACGATGATGGTGGCCCAGGTGTGCGGCTACGCGCCG--GGCGA 349740 Query 123190 CTTCGTGTGGACGGGTGGGGATGTGCATCTGTACTCCAACCACCTGGAGCAGGC 123243 ||||||||||| || || || || || ||| |||||||| |||||||| Sbjct 349739 TTTCGTGTGGACCGGCGGCGACTGCCACCTCTACCTGAACCACCTCGAGCAGGC 349686 >seq4037 Length=4543 Score = 109 bits (120), Expect = 9e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 122789 ATCGACCAAATCAGCAAGGTCATGGAACAACTGAAAAACGACCCGGACAACCGCCGTATC 122848 ||||||||||||||| |||| || || ||||| || |||| ||| ||||| ||| Sbjct 4376 ATCGACCAAATCAGCCAGGTGATCGACACGCTGAAGAAGAACCCCGACTCGCGCCGCATC 4435 Query 122849 ATCGTCAGTGCCTGGAACGTGGCTGACCTGGATGAAATGGCGTTAGCACCATGCCATGCC 122908 |||||||| || ||||||||||| || ||||| | |||||| | || ||||| || Sbjct 4436 ATCGTCAGCGCGTGGAACGTGGCCGAGCTGGACCAGATGGCGCTGATGCCCTGCCACGCG 4495 Query 122909 TTCTTCCAGTTCTAC 122923 ||||||||||||||| Sbjct 4496 TTCTTCCAGTTCTAC 4510 Score = 107 bits (118), Expect = 3e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 ||||| ||||||||||||||| | | |||||| || |||||||| |||||| | Sbjct 4109 GACCGCACGGGCACGGGCACCAAGAGCGTGTTCGGCTACCAGATGCGCTTCGACCTGAAC 4168 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 | || || |||||||| || ||||| ||||| ||||| ||||||||| ||||| Sbjct 4169 GAGGGCTTTCCGCTGGTGACCACCAAGAAGGTGCACCTGAAGTCCATCATCGTCGAGCTG 4228 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 ||||||||||| | || | | ||| | | | ||||| || | ||| | ||| Sbjct 4229 CTGTGGTTCCTTACCGGTTCCAGCGACAACAACTGGCTGAAGGAACGCGGCGTGACGATC 4288 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 ||||| || ||||| ||||| || | | ||||| || ||||| ||| ||||| Sbjct 4289 TGGGACGAGTGGGCGCGCGAAGACGGCAGCTTGGGCCCCGTCTACGGCGTGCAGTGGCG 4347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777585760057200