Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq1398 136 1e-27 seq4721 102 2e-17 >seq1398 Length=15916 Score = 136 bits (150), Expect = 1e-27 Identities = 198/277 (71%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 13909 GCCGTTCAGCAGCTGGCCTTCTTCCTTCAGCGCCAGACCGTACATGAGGCGGTTGTTGAC 13968 ||| ||||||||||| |||||||||||| ||| |||||||| |||||| || || Sbjct 12900 GCCCTTCAGCAGCTGCTGCTCTTCCTTCAGCTTCAGGCCGTACATCAGGCGGCCGTCGAT 12959 Query 13969 GTATGACTGCAGCATTGGCGCATCGTCCATAACCTGACGTGACGCCTGCACCCAGTGGGC 14028 ||| ||||||||||| || || || ||| ||||| || || | | ||||||||| Sbjct 12960 GTACGACTGCAGCATGGGGGCGTCAGCCAGCACCTGCTTGGAAGCGCGAATCCAGTGGGC 13019 Query 14029 GATGGTCTTCACGTTTGCGGTCTGCTTGCT-GAAGGTAATATCCGATTCAGGTTTCAGCG 14087 ||||||| |||| ||||| || | ||| ||| || ||||| || | ||| || | Sbjct 13020 GATGGTCGCCACGGGTGCGGACT-CCAGCTCGAACGTGATATCGGACTGAGGCTTGGTTG 13078 Query 14088 CCTTCTCGGCCACCACATCGGCGTTATTGGTAAACACTTCTTCACGGACATATTCCAGGG 14147 || ||| |||||||| |||||| || || |||| ||||||||| || || | || Sbjct 13079 CCAGTTCGCTCACCACATTGGCGTTGTTCGTGAACAGCAGTTCACGGACGTACTCGATGG 13138 Query 14148 AGTTACTGGAAATGCGGCCCTGCGCCAGCAGATCACG 14184 ||| || |||||||| |||||| ||||| Sbjct 13139 CGTTCGAGGTGGTGCGGCCCCAATTCAGCAGGTCACG 13175 Score = 80.6 bits (88), Expect = 7e-11 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 15573 GGCTGCAGGGTGTACTGCAGGAAGCCTAGATTCTGCTGCTCGATGCCCGATCCCCAGCTC 15632 ||| |||| ||| | ||||||||| | |||||||||||||||| | ||||||||| Sbjct 14677 GGCCGCAGCGTGAAGGTCAGGAAGCCAATCATCTGCTGCTCGATGCCGGTGCCCCAGCTC 14736 Query 15633 GTTGATTTCTCGACGTCGCCGACAAGGTGAGGCGGTACGCCAAA 15676 || || |||||| | |||||| | ||| ||||| || ||||| Sbjct 14737 GTAGACTTCTCGGAATGGCCGACCATGTGCGGCGGCACACCAAA 14780 >seq4721 Length=367317 Score = 102 bits (112), Expect = 2e-17 Identities = 192/281 (68%), Gaps = 10/281 (4%) Strand=Plus/Minus Query 23583 CAGCGCTTTCTGGATGGTGTCGATCTTTGTAGAGTGATGCAAA--TCGAGGATGCGGGTT 23640 |||||| || ||||||||||||||| |||| ||| || || |||| || || Sbjct 82103 CAGCGCCTTGGCGATGGTGTCGATCTTGGTAGCGTG--GCCAAGGTCGACAATCCGCTGC 82046 Query 23641 ATCTCCTGCGGGCGCGTATCAATCATGCGCGCCAGCTCGGCATTACTTACTCCGCTCTGA 23700 | ||||||||||||||| | ||| ||| |||||||| ||||| || | ||||| | Sbjct 82045 ACCTCCTGCGGGCGCGTTCCCATCCGGCGGGCCAGCTCTGCATTGCTGATTCCGCCTTCG 81986 Query 23701 ACAACCGCGTTGAGCAACAGAACTTTGGCCGCCACGCTTGCCGGCACCTCAACGAAAGCT 23760 || | | ||||||||| ||| || || ||||| ||||| | |||| |||| | Sbjct 81985 ACCAACTCGTTGAGCAGCAGCACCTTCGCCGCGACGCTCACGGGCAGTTCAATCAGGCGC 81926 Query 23761 TCTCC------ATCACCGGATGGAGCGGGAATTTCACGCCTATCCTCAAAGTAAAAATCA 23814 || || || |||| || | ||| | |||| || || |||||||| || Sbjct 81925 TCGCCGGCCTGCGCAGCGGACGGGGTGGGTACGCGCCGCCGGTCTTCGAAGTAAAAGTCC 81866 Query 23815 AACGCAGTCACCAGAGCATCCTGCGCCATTGAAAGCGCCTC 23855 | ||| | ||||| ||||||| ||||| | || ||||| Sbjct 81865 ATCGCCGATACCAGCGCATCCTCGGCCATGGCCAGTGCCTC 81825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124709754825916