Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_020083.1 Length=157834 Score E Sequences producing significant alignments: (Bits) Value seq888 98.7 1e-15 >seq888 Length=58548 Score = 98.7 bits (108), Expect = 1e-15 Identities = 566/893 (63%), Gaps = 33/893 (4%) Strand=Plus/Minus Query 105625 GCGGCCAATCTCATTTCAGTTGACAAACCCAATTACCAATATGTTGCCGCGCGCCTGAAG 105684 || ||| | || || || | |||| ||| | ||||| || | |||||||||||| | Sbjct 24981 GCCGCCGACCTGATCTCCGAGGACACGCCCGACTACCAGTACCTGGCCGCGCGCCTG--G 24924 Query 105685 TCATATG--ACCTGCGCCAGCGTGTGTATGGTGAATACTATCCCCCGGCGCTGATTGACA 105742 ||| | |||||||| || | ||||| | | | | || ||| ||| |||| Sbjct 24923 CCATCTTCCACCTGCGCAAGATCGCCTATGGCCAGTTCGAGCCGCCGCACCTGTATGACC 24864 Query 105743 TCTTCAGGAAGAACACCGACCTCGGTATCTACGACGCGGGCTTCCTGGTTGACTACTCTC 105802 | | | | | |||||||| || | |||||| || | | |||| |||||| | Sbjct 24863 ACGTGAAGGCGTTGACCGACCTGGGCAAGTACGACCCGCACCTGCTGGCCGACTACAGCC 24804 Query 105803 AGGCTGAGTTTGACCAGCTCCAGGCTGTCATCAACCACAAGCGTGACAAACGCTTTACCT 105862 | || || |||||| || | || || || | ||| ||| |||| ||| | | Sbjct 24803 GCGAAGAATTCGACCAGATCAACGCCTTCGTCGATCACTGGCGCGACATGGACTTCTCTT 24744 Query 105863 GGGCTGCGATGGTTCAGCT-GACGGAGAAATACCTGCTGCAGAACCGCGCCAAGAAGTCT 105921 || ||| | ||||| || || || |||||| |||||||||| | | ||| Sbjct 24743 ACGCCGCGGTCAAACAGCTCGAAGGC-AAGTACCTGGTGCAGAACCGGGTGACAAAGCG- 24686 Query 105922 GAGGGTATCTTCTATGAGACCCCGCAGGTGATGTACATGGCGATTGCGATGGCTCTGTTC 105981 | |||| |||| ||||||| || | ||| || | | || ||| |||||| Sbjct 24685 --------CATCTACGAGAGCCCGCAGATGCTCTACGTGCTGGTGGCCATGTGCCTGTTC 24634 Query 105982 TCCAAATGGAACCGTGTTGAGCGCA---TGGACATGGTCACCCGCTTCTATGACTACGCC 106038 |||| | ||| | || ||| ||||| |||| |||||||| || || Sbjct 24633 GCCAAGT---ACCCAGCGGAACGCCGCCTGGACTATGTCAAGCGCTTCTACGAAGCCGTT 24577 Query 106039 A-GCACCGGTAAATTCAGTCTGCCGACCCCGATCATGGCTGGCGTCCGTACCCGTACCCG 106097 || | | ||| | ||||| ||||| || ||| | ||||| || || | | || Sbjct 24576 TCGCGCTTCAAGATTTCG-CTGCCTACCCCCATTATGTCCGGCGTGCGCACGCCCATGCG 24518 Query 106098 TCAGTTCAGCTCCTGTGTGCTGATCAAAGTCGGCGACACGCTGGACTCTATCAAGGCCGC 106157 ||||||||||| || ||||||||| || || ||||| ||||| ||||| ||| | Sbjct 24517 CCAGTTCAGCTCGTGCGTGCTGATCGAATGCGACGACAGCCTGGATGGCATCAACGCCAC 24458 Query 106158 AGGCTCTGCTATCGTTGACTA--TGTCAGCAAGCGCGCAGGCATCGGTCTGGACGTGGGG 106215 | || ||||| | || |||| || ||||||| |||||||| | | | || Sbjct 24457 CACCAGCGCCATCGTCAAGTACGTGTC-GC-AGCGCGCTGGCATCGGCATCAATGGCGGC 24400 Query 106216 GAGATTCGTGCCCTCGGTGCTCCTATCCGTGGCGGTGAGATGGAGCATACCGGAACTATC 106275 || |||||| | || ||||| ||||| || | |||| || || | Sbjct 24399 CGTATCCGTGCCGTGGGCAGCGAAATCCGGGGCGGCGAAGCGCAGCACACGGGCTGCCTG 24340 Query 106276 CCATTCATCAAGAAGTTCGTCGGTGACCTGAAGAGCTGCTCTCAGGGTGGGGTTCGCGGC 106335 || ||| |||||| |||| | || | | ||| |||||| ||||| || || || || Sbjct 24339 CCCTTCTTCAAGATGTTCCAGGCTGCCGTCAAGTCCTGCTCGCAGGGCGGTGTGCGGGGA 24280 Query 106336 GGCTCTATGACTGCCTACTATCCGATGTGGCACCTGCAGTTCCCAGCCATGATTGTTCTG 106395 || | || | ||| || ||||||||||| | | | | || | || || Sbjct 24279 GGGGCGGCCACGCTGTTCTACCCCCTGTGGCACCTGGAAGTGGAATCGCTGCTGGTGCTC 24220 Query 106396 AAGAATAACCGTGGCACTGAGAACAACCGCGAACGCCGCACTGATTATGGTGTGCAGATC 106455 ||||| ||||| || ||| | |||||| |||| || ||||||||||||||| Sbjct 24219 AAGAACAACCGCGGTGTGGAGGAAAACCGCATTCGCCATTTGGACTATGGTGTGCAGATC 24160 Query 106456 AACCGTGTCATGATGGAAC-GCGCCTG--GAACAAACAGAACATCTACCTGTT 106505 || || || || | | ||||||| || || ||||||||| ||||| Sbjct 24159 AATCG---CACCCTGTACCAGCGCCTGATCAAGAACCAGAACATCACGCTGTT 24110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504910774957680