Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_020201.1 Length=142349 Score E Sequences producing significant alignments: (Bits) Value seq888 201 1e-46 >seq888 Length=58548 Score = 201 bits (222), Expect = 1e-46 Identities = 224/297 (75%), Gaps = 4/297 (1%) Strand=Plus/Plus Query 76461 AACGCCCAAGTCTCTACCCATGTTTCCAGGGTGGTGTCGGATACGATCGGCAGAAGAACT 76520 |||||||| ||||| | ||| || ||||| || || || | |||||| |||| Sbjct 22544 AACGCCCAGGTCTCGATCCACGTCTCCAGCTCGGGCAGCGACACCAGCGGCAG--GAACG 22601 Query 76521 GC--GTTCGGCCCACGGCCCTGTACAGAATCCAGGAGGATCTGGTACTTCAGGTTGCTGA 76578 | ||| || | || ||||| | || ||||| || ||||||| ||||||||||||| Sbjct 22602 CCATGTTGGGACTGCGCCCCTGGATGGAGTCCAGCAGCGTCTGGTATTTCAGGTTGCTGA 22661 Query 76579 TGAAGATGTGCTTCTCGTGATCCGGCAGGTTCATGTAGTCGATTCGGTCACGGGTCACGT 76638 ||||||||||||||||||| |||||||||||| ||| |||| ||||| | || | || Sbjct 22662 TGAAGATGTGCTTCTCGTGGTCCGGCAGGTTCTGGTAATCGAGCCGGTCCTGCGTGATGT 22721 Query 76639 TAACTTCTTCAGGTCGCCAGAAGAACGCCAGTTGCTTTTCAATCAGCTTCTCGAACTTCG 76698 |||||||| || ||||||||||| | || |||||||| |||||||||||||| | | Sbjct 22722 CTACTTCTTCCGGGCGCCAGAAGAAGGAGAGCTGCTTTTCGATCAGCTTCTCGAAGATGG 22781 Query 76699 CATGTTTCTGCTGGTCGTAGCGAGAAACGTTCGGTGTCTCTCCGAGGAACATCGGCT 76755 | ||||||||||||||||| | |||||| | || |||| |||||| |||| Sbjct 22782 GGTACTTCTGCTGGTCGTAGCGTGCCACGTTCACCGGCTGGCCGAAGAACATGGGCT 22838 Score = 107 bits (118), Expect = 2e-18 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 75117 TTCAGCATATACTGGGTGCCGGACAAATGCAAGGCTTCATCACGAGCAATCAGTTCGATA 75176 ||||||| | ||| || |||| | |||| || || ||||| || || || ||| Sbjct 22133 TTCAGCAAGTGCTGCGTACCGGTAAGGTGCAGCGCCTCGTCACGCGCGATGAGGCGGATG 22192 Query 75177 ATGTTGGTGTTGCCCAGCATTACCCCGCGCTCACCGAAGGCGAAGGAGCAGGCAAAGCTC 75236 || |||| |||||| ||| | | |||||| |||||||||| ||||| || |||||| Sbjct 22193 ATCTTGGCGTTGCCTTCCATGAGCTTGCGCTCGGCGAAGGCGAACGAGCACGCGAAGCTC 22252 Query 75237 ACGTAGAAGCGGATCGCTTCCAGTGCGTTGATGTTGTGAAGGCACAGGTACA 75288 ||||||||||||||||| || || ||| | ||| ||||||||||||| Sbjct 22253 ACGTAGAAGCGGATCGCCTCAAGGATGTTCACGTTCATCAGGCACAGGTACA 22304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455361721443480