Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_020488.1 Length=38682 Score E Sequences producing significant alignments: (Bits) Value seq3471 96.9 9e-16 >seq3471 Length=5556 Score = 96.9 bits (106), Expect = 9e-16 Identities = 138/193 (72%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 5650 AAACGATGAGTGCGCAACAATAACAGCATCCCAATCACCAGTAGCAATGCGAGCAAATAA 5709 ||||||||| || ||| || |||||||||||||||||| || || || | ||||| | Sbjct 2365 AAACGATGAATGGCCAATAACAACAGCATCCCAATCACCGGTTGCTATTTGTGCAAAGAG 2306 Query 5710 GCGCTTACGGTTGCCTTTCTCAAAGTCCTTCTTGGTGGCCGCCAGCACATTTGCGCCAGG 5769 || || | |||| |||| |||||||| || || || | ||| || | ||| Sbjct 2305 ACGTTTCCTGTTGTCTTTTTCAAAGTCTGATTTCTCAGCAAGTAGGATATTAGCACTAGG 2246 Query 5770 GTAAAGTTTGGTGAAGTCCTCTGCCCATTGCCCGACCAAGTGATTAGGAACAACAAACAT 5829 ||| | |||| ||| || ||| |||||| || | || ||||| ||||| |||| ||| Sbjct 2245 GTAGATTTTGTAGAATTCGTCTTTCCATTGACCCAGTAAATGATTTGGAACGACAACCAT 2186 Query 5830 TGGTTTCT-TAGC 5841 || |||| |||| Sbjct 2185 GGGCTTCTGTAGC 2173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123653814478696