Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3299 87.8 2e-12 seq365 87.8 2e-12 >seq3299 Length=5804 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/234 (68%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||| || || | || ||||||||||||||||| |||||||||||||| || || Sbjct 1197 ACGCCAATTGGTCCCATACCCGGACCTCCACCTCCATGAGGAATACAGAATGTTTTGTGC 1256 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGA----CCTACCTG 138298 | ||| | |||| | ||||| ||| | || | || || | | ||||| || Sbjct 1257 AGATTCAAATGAGAAACATCGCTTCCAAAATCTCCAGG----GCGACACAATCCTACTTG 1312 Query 138299 TGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACA 138358 || || | || || ||||| | ||||||||||||||||| | ||| || | | || Sbjct 1313 GGCGTTCATGTTGGCTCCATCCAAATATACCTGACCACCATGCTTATGGACAAGTTCGCA 1372 Query 138359 TATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCAT 138412 | | | | ||| || || | |||| ||| |||||||| || ||||| Sbjct 1373 GACATCTACAACGTTGTCCTCGAAAATGCCATTAGTTGATGGATAAGTTATCAT 1426 >seq365 Length=325901 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/234 (68%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||| || || | || ||||||||||||||||| |||||||||||||| || || Sbjct 279932 ACGCCAATTGGTCCCATACCCGGACCTCCACCTCCATGAGGAATACAGAATGTTTTGTGC 279991 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGA----CCTACCTG 138298 | ||| | |||| | ||||| ||| | || | || || | | ||||| || Sbjct 279992 AGATTCAAATGAGAAACATCGCTTCCAAAATCTCCAGG----GCGACACAATCCTACTTG 280047 Query 138299 TGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACA 138358 || || | || || ||||| | ||||||||||||||||| | ||| || | | || Sbjct 280048 GGCGTTCATGTTGGCTCCATCCAAATATACCTGACCACCATGCTTATGGACAAGTTCGCA 280107 Query 138359 TATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCAT 138412 | | | | ||| || || | |||| ||| |||||||| || ||||| Sbjct 280108 GACATCTACAACGTTGTCCTCGAAAATGCCATTAGTTGATGGATAAGTTATCAT 280161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578963971307640