Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq622 123 3e-23 >seq622 Length=114055 Score = 123 bits (136), Expect = 3e-23 Identities = 344/523 (66%), Gaps = 10/523 (2%) Strand=Plus/Minus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || |||||||| || | || | ||| | ||||| | ||| | |||||| || || Sbjct 6711 CCAGTGGCAATTACGTAGTCTTGAGGCTGGGGCTGTTGCAACATCATCCACATGGCTTCC 6652 Query 47848 ACATAATCTCTG-GCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACA 47906 || || || ||| ||||| ||||||||||| || || | ||| || || | | || Sbjct 6651 ACGTAGTC-CTGAGCATGACCCCAGTCACGCTTTGAGTCCAAATTGCCCAGCTCCAGGCA 6593 Query 47907 GTCTTGCTTACCTTCAGAGATTGCTTTT----AATGCTCTTGTAATCTTACGAGTTACAA 47962 || || | ||||| ||| |||| | | || || || || | || || | Sbjct 6592 ATCCATCTGA--TTCAGGGATA--TTTTCGCCACCGATCGGGTGATTTTCCTGGTCACGA 6537 Query 47963 AAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTC 48022 || | || || || | || || || ||||| || ||||||||| |||| ||| |||| Sbjct 6536 AATTCTCTCCTCGACGAGGCGACTCGTGATTGAACAGAATACCATTACATGCAAACATAT 6477 Query 48023 CGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAG 48082 ||| | ||| |||||||| | || |||||||| || || | || || |||| | Sbjct 6476 TGTAAGCTTCCCGATAGTTGATCACAATCCAGTATCCGTACATCTTGGCGCAGGCATACG 6417 Query 48083 GAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAA 48142 |||| |||||||||||||| || |||| ||||||| || || || || ||||| | Sbjct 6416 GAGATCGTGGATAGAAAGGCGTCTTCTCATTCTGTGGTGTTTCAACGACTTTTCCATACA 6357 Query 48143 GTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTG 48202 |||| ||| ||| ||||||| || || | |||| | || | || | Sbjct 6356 GTTCTGAGGTACTTGCCTGATAGAACCGGACAGATTTCTCCAGCCCACAGGTCCTGATGG 6297 Query 48203 CCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAA 48262 | || |||| |||| || || | ||| || | | || |||||| | || | Sbjct 6296 CATCCAGCAGCCTCAATGTCCCCACGGCGTCCACTTCCGCCGTGTACTCGCTGAGATCGA 6237 Query 48263 ACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTC 48305 |||| ||||| || |||||||| ||| | || || ||||| || Sbjct 6236 ACGACACCTTGACGTGACTCTGCGCCGCCAGGTTGTAAATTTC 6194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665454828039240