Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_021073.1 Length=107218 Score E Sequences producing significant alignments: (Bits) Value seq888 495 3e-135 >seq888 Length=58548 Score = 495 bits (548), Expect = 3e-135 Identities = 1790/2762 (65%), Gaps = 90/2762 (3%) Strand=Plus/Minus Query 9245 ATCTCCCTCCCGACACCAATCATGTCTGGTGTTCGTACACCGACCCGCCAATTCAGCTCA 9304 || || || || || || || ||||| || || || || || | ||||| |||||||| Sbjct 24564 ATTTCGCTGCCTACCCCCATTATGTCCGGCGTGCGCACGCCCATGCGCCAGTTCAGCTCG 24505 Query 9305 TGCGTAAAAATCGAAAGCGGTGATAGCCTAAAATCAATCAATGCAACATCAGGCGCAATC 9364 ||||| |||||| ||| || ||||| | ||||| || || | |||| ||| Sbjct 24504 TGCGTGCTGATCGAATGCGACGACAGCCTGGATGGCATCAACGCCACCACCAGCGCCATC 24445 Query 9365 GTGAGTTACGTTTCACAGCGTGCAGGTATTGGCATTAACGCGGGTCGTATCCGAGCATTA 9424 || | ||||| || ||||| || || || ||||| || | || |||||||| || | Sbjct 24444 GTCAAGTACGTGTCGCAGCGCGCTGGCATCGGCATCAATGGCGGCCGTATCCGTGCCGTG 24385 Query 9425 GGTTCTGAGATTCGTGGTGGTGAAGCGGTACATACTGGTTGTATCCCATTCTACAAACAC 9484 || || || || || || |||||| || || || || | || |||| ||| Sbjct 24384 GGCAGCGAAATCCGGGGCGGCGAAGCGCAGCACACGGGCTGCCTGCCCTTCTTCAAGATG 24325 Query 9485 TTCCAAACAGCAGTGAAATGTTGTAGCCAAGGCGGTGTTCGTGGCGGCGCGGCAACGGTA 9544 ||||| | || || || | || || |||||||| || || || ||||| ||| | Sbjct 24324 TTCCAGGCTGCCGTCAAGTCCTGCTCGCAGGGCGGTGTGCGGGGAGGGGCGGCCACGCTG 24265 Query 9545 TTCTACCCAATGTGGCACCTAGAGTACAAATCACTAATCGTACTCAAGAACAACCGTGGT 9604 |||||||| |||||||||| || |||| || | || |||||||||||||| ||| Sbjct 24264 TTCTACCCCCTGTGGCACCTGGAAGTGGAATCGCTGCTGGTGCTCAAGAACAACCGCGGT 24205 Query 9605 ATCGAAGAAAACCGTGTACGTCATATGGACTACGGTGTACAAATTAATGGCCTGATGTAT 9664 | || |||||||| | || ||| ||||||| ||||| || || ||| || |||| Sbjct 24204 GTGGAGGAAAACCGCATTCGCCATTTGGACTATGGTGTGCAGATCAATCGCACCCTGTAC 24145 Query 9665 AAGCGTCTGCTGTCTGGTCAGAACATCACTTTATTCTCACCTCATAGTGTACCGGGTCTA 9724 |||| ||| | ||||||||||| | ||||| || || ||| || || || Sbjct 24144 CAGCGCCTGATCAAGAACCAGAACATCACGCTGTTCTCGCCGCACGATGTGCCCGGCCTG 24085 Query 9725 TACGATGCATACTTCGAAGACCAAGATAAGTTCGAGCGACTGTAC-ACCAA----AGCGG 9779 ||||| || | ||||| ||||| | |||||||||| || ||| | || ||| | Sbjct 24084 TACGACGCGTTCTTCGCCGACCAGAACGAGTTCGAGCGCCTCTACGAACAGTACGAGCAG 24025 Query 9780 AAT-CTGATCCATCAATCGAAAAAGACACAATCTCTGCTAAGGAAGCATTCAGCATACTA 9838 || || ||||| ||| || | ||| || | || |||| ||| | | Sbjct 24024 GATGCT--TCCAT---TCGCAAGCG-CACCATGCCGGCCGTGGAACTGTTCTCGCTGATG 23971 Query 9839 ATGCAAGAGCGTGCTTCTACAGGTCGCATCTACATTCAGCACGTAGATCACTGTAACATT 9898 ||||| ||||| || || || ||||||||||| ||| |||| || ||||| |||| Sbjct 23970 ATGCAGGAGCGCGCCAGCACCGGCCGCATCTACATCCAGAACGTGGACCACTGCAACACG 23911 Query 9899 AACGGTCCTTTCGATGAGCGCGTTGCACCAGTACGCCAATCAAACCTATGTATGGAAATC 9958 || | || ||||| | || ||||| || ||||| || ||||| || ||||| ||| Sbjct 23910 CACAGCCCGTTCGACGCGCAGAAGGCACCCGTGCGCCAGTCCAACCTGTGCATGGAGATC 23851 Query 9959 GCACTACCAACCAAACCGTTGAATAACGTCGATGATCCTGATGGTGAAGTTGCGCTATGT 10018 || || ||||| ||| |||| | || ||||| | || || | ||||| || Sbjct 23850 CTGCTGCCCACCAAGCCGCTGAACGATATCAATGATGAAAACGGCGAGATCGCGCTGTGC 23791 Query 10019 ACTCTATCTGCATTCAACTTGGGTAAGATTGAATCGGTTGGTGATTTTGAGCGTCTGTCT 10078 || || || || |||||| |||| | | |||||| | | ||| | || ||||| Sbjct 23790 ACGCTGTCGGCCTTCAACCTGGGCGCGCTGGAATCGCTCGATGAGCTGGAAAACCTGTCC 23731 Query 10079 CGTATCGTTGTGCGTGCATTGGATAATCTGTTAGACTACCAAAACTACCCATTAC---CT 10135 | | |||||||| | ||| ||| | |||||||| ||||||| | || Sbjct 23730 GACCTGATCGTGCGTGCGCTCGATGCCCTGCTCGACTACCAGGACTACCCCGTCAAGGCT 23671 Query 10136 GC-CGCAGAACGTTCGACAATGCGCAGACGTAGCCTTGGTGTAGGTATTATCAATTACGC 10194 || ||| | |||||| |||| | | || | || || || | ||||| ||||| Sbjct 23670 GCGCGCGTGGCCACCGACAA-GCGCCGC--TCGC-TGGGCGTGGGCGTCATCAACTACGC 23615 Query 10195 CCACTGGGTGGCTAAGAATGGCCTAAAATACAGTGACGGTAGCGCAAACAACAAGACGCA 10254 | ||| |||| ||||| | ||| |||||| |||||| | | |||||| Sbjct 23614 CTACTACCTGGCCAAGAACAACAGCCGTTACTCTGACGGCAGCGCACTCGGCCTGACGCA 23555 Query 10255 TGAGCTGATT-GAAGCTATGCAGTTCTACTTGCTACAAGCATCAATGGAACTGGCTAAAG 10313 | | || ||||| || |||| |||| |||| |||| ||| || | || | | | Sbjct 23554 C-ACCACCTTCGAAGCGAT-CAGTACTACATGCTCAAAGCGTCAGTGCAGCTCTCGCACG 23497 Query 10314 AGAAGGGTATGTGTTCTGGATTCGAAGACACTAAGTATGCCAAAGGTGTTATGCCAGTTG 10373 || | | | |||||| || || | |||||| || | |||| | | Sbjct 23496 AGTTCAGACCTTACGAAGCATTCGACGAAACCAC-TATGCCGCCGGCATGCTGCCGATCG 23438 Query 10374 ATCGTTATAAGTCTG-ATGTCGACAACACCCACACAGCAGAACTACAGATGAATTGGAAT 10432 | || ||| | | |||||| | | | | | || || ||| | | ||| | Sbjct 23437 ACACGTACAAGAAAGGACCTCGACACCGTCTGCGCCGAAGCCCTGCAGCTCGACTGGGAA 23378 Query 10433 TGGTTGCGTAATGAGATT--GTCCATAATGGCCTACGTAACTCTACTCTATCTGCATTCA 10490 | |||| || || | || | ||| | || ||||| || | | || ||| Sbjct 23377 GCGCTGCGCGCCGACATCCAGGCCC--ACGGCTTGCGCAACTCCACGTTGACCGCGCTCA 23320 Query 10491 TGCCTTCGGAAACATCTTCTCAGGTATCTAACGCAACAAACGGCATCGAACCACCTCGTG 10550 |||| |||||||| || ||| | | || || || ||||||||||| || || || | Sbjct 23319 TGCCCTCGGAAACGTCGAGCCAGATCGCCAATGCCACCAACGGCATCGAGCCTCCCCGCG 23260 Query 10551 GCTACATGTCAGTTAAGCAGTCGAAGGATGGCATCTTAAAACAAATCGTACCGGGTTATG 10610 | |||| || ||||||||||||||||||||| | || |||| |||| | Sbjct 23259 GTGTGGTGTCTGTCAAGCAGTCGAAGGATGGCATCCTGCGGCAGGTCGTGCCGGAACTGG 23200 Query 10611 ATAAATACAAAGACCAATACGAGTTACTATGGAATATCAAAGACAACACTGGTTACTTGG 10670 | || | ||| |||||||| || ||| | || ||||| || ||| | Sbjct 23199 ACCGCCTGAAGGGCCAGTACGAGTTGCTGTGGCAGATGCCCAACAACGACGGCTACCTCA 23140 Query 10671 AATTGGTTGCCATCATGCAGAAGTTTGTGGATCAGGCTATTTCAGCAAACACTAACTACG 10730 | | || | | | ||||||||||| || || ||| | || || || ||||| ||||||| Sbjct 23139 AGCTCGTCGGCGTGATGCAGAAGTTCGTCGACCAGTCCATCTCTGCGAACACCAACTACG 23080 Query 10731 ACCCAGAAAACTACCCAGAAAGTAAGGTTCCAATCAAAAAGTTATTGCAAGATTTGGTGA 10790 |||| | |||| |||| | ||||| || || || | || | ||| || || Sbjct 23079 ACCCGCAGCGCTACGCAGACGGCCGTGTTCCCATGCAACAGCTGCTGAAGGATCTGCTG- 23021 Query 10791 CATGT-TATAGACTCGGCATCAAGACACTGTACTACCACAACACACGAGATGGTGCT--A 10847 || | || | || ||| | ||||| |||||||||||||||| || ||||| || | Sbjct 23020 CAGGCCTACAAGCTGGGCGTGAAGACCTTGTACTACCACAACACCCGCGATGGCGCGGAA 22961 Query 10848 GTGATGAACAGAA-AGAAGACGATGGTGGCTGCGATGGTGGTGGCTGCAAAATTTAA--- 10903 | ||| | || | | | ||| | | ||||| | || | ||||| || | | Sbjct 22960 GACATGCAGAGCGCACAGGCCGAAGACGACTGCGCCAGCGGCGCATGCAAGATCTGACCC 22901 Query 10904 -GGAGT-CATG-----ATGAATTATTCAGTA--TTTAACCAAACAAAAAACGACCAACTG 10954 |||| | || |||| || ||| | ||| | || | |||||||| || Sbjct 22900 GGGAGAGCGTGCCTATATGACCTA--CAGCACCTTTTCGCGCACCGACAACGACCAGCTC 22843 Query 10955 AAGGAGCCGATGTTCTTCGGCCAATCAGTTAACGTATCCCGTTACGACCAACAGAAACAT 11014 |||||||| |||||||||||||| | || ||||| | || |||||||| ||||| | Sbjct 22842 AAGGAGCCCATGTTCTTCGGCCAGCCGGTGAACGTGGCACGCTACGACCAGCAGAAGTAC 22783 Query 11015 GATGTTTTTGAGAAACTAACTCAGAAGCAACTATCATTCTTCTGGCGTCCCGAAGAAGTT 11074 | || ||||| || | | ||||| || || ||||||||||| || |||||||| Sbjct 22782 CCCATCTTCGAGAAGCTGATCGAAAAGCAGCTCTCCTTCTTCTGGCGCCCGGAAGAAGTA 22723 Query 11075 GATGTGTCACAAGACCGAATCGACTACAGTAAAATGACTGATGCGGAGAAACACATCTTC 11134 || | | || ||||| |||| ||| || || | || ||||| ||||||||| Sbjct 22722 GACATCACGCAGGACCGGCTCGATTACCAGAACCTGCCGGACCACGAGAAGCACATCTTC 22663 Query 11135 ATTAGTAACCTGAAGTACCAAACATTACTCGACTCGATCCAAGGCCGTAGCCCGAATATG 11194 || || |||||||| ||||| || | || ||||| ||||| || || || || || ||| Sbjct 22662 ATCAGCAACCTGAAATACCAGACGCTGCTGGACTCCATCCAGGGGCGCAGTCCCAACATG 22603 Query 11195 GCGTTCCTGCCTATTGTGTCACTACCAGAAGTCGAAACTTGGGTAGAAACGTGGAGCTTC 11254 ||||||||||| | ||||| || || || | || || ||| | || || ||| || Sbjct 22602 GCGTTCCTGCCGCTGGTGTCGCTGCCCGAGCTGGAGACGTGGATCGAGACCTGGGCGTTT 22543 Query 11255 AGCGAAACCATCCACTCTCGTTCATACACACACATCATTCGCAATATTGTCAATGACCCT 11314 |||||| |||||||| || || ||||| |||||||| ||||| || ||||| ||||| Sbjct 22542 TCCGAAACGATCCACTCGCGCTCGTACACCCACATCATCCGCAACATCGTCAACGACCCC 22483 Query 11315 AGTATTGTGTTCGATGATGTTGTTGAGAATAAGCACATCCTAGAGCGAGCTAAAGATA-T 11373 | |||||||||| || | || || |||| ||| ||| || | || | | Sbjct 22482 TCTGTTGTGTTCGACGACATCGTGCGCAACGAGCAGATCAAGCTGCGTGCGACGGACATT 22423 Query 11374 TGCTCGTTACTACGACGATCTCATC----TTGGCATGC--AAAGAGCA--TGAGC----- 11420 | |||| || |||||||| || ||| | ||||| | | ||| || || Sbjct 22422 TCCTCG-TATTACGACGACCTGATCCACGACGCCATGCTGTACGCGCAGCTGGGCGCCGG 22364 Query 11421 -----------TAAACGGCAA---ACACACAA------TGCGCGACCTAAAGAAAAAGTT 11460 | |||||| | ||| || || || || ||||| ||| | Sbjct 22363 GCGGCACACCATCAACGGCCACGTGCACGAAATCAACGTGTATGAGCTGAAGAAGAAGAT 22304 Query 11461 GTACTTGTGCATGATGGCTGTTAATGTATTAGAAGCAGTTCGTTTCTACGTTAGTTTCGC 11520 |||| ||||| ||||| || || | | || || | || |||||||| || ||||| Sbjct 22303 GTACCTGTGCCTGATGAACGTGAACATCCTTGAGGCGATCCGCTTCTACGTGAGCTTCGC 22244 Query 11521 TTGTTCATTTGCATTCGCTGAACGCGAGATTATGGAAGGTAATGCTAAAATCATCAAGCT 11580 || || || || ||||| || ||| || | |||||||| || || || |||||| || Sbjct 22243 GTGCTCGTTCGCCTTCGCCGAGCGCAAGCTCATGGAAGGCAACGCCAAGATCATCCGCCT 22184 Query 11581 TATTGCTCGTGATGAAGCACTACACCAAAGCGGTACACAGCACATGCTGAAGATGTGGAA 11640 || || ||||| || || || |||| | |||||| |||||| ||||||| || | Sbjct 22183 CATCGCGCGTGACGAGGCGCTGCACCTTACCGGTACGCAGCACTTGCTGAATATCATGCG 22124 Query 11641 CAACGGCACCGATGATATGGAAATGGCTTCTATCGCACATGAGTGTCGCG-AAGAGTCAA 11699 ||| || || || | || ||||| || ||||| || | | |||| Sbjct 22123 TTCCGGGCAGGACGACCCCGAGTTCGCCCTCATCGCGCAGGAGTG-CGAGCACGAGTGCT 22065 Query 11700 TCGAAATATTCAAGATGGCCGAAGAACAAGAGAAAGACTGGGCAAACTATCTATTCAAAG 11759 ||| || ||||||| || | || || || | ||||| ||||| | ||| | Sbjct 22064 TCGCGATGTTCAAGAACGCGGCGCTGCAGGAAAAGCAGTGGGCGGACTATTTGTTCCGCG 22005 Query 11760 ATGGTGGTATGATCGGACTAAACAAAGATATTCTATGTGAATATGTTGAGTACATCACAA 11819 |||| |||||||| || ||||| || || || | | || || ||||||||||| | Sbjct 22004 ATGGCTCCATGATCGGCCTGAACAAGGACATCCTGAGCCAGTACGTCGAGTACATCACCA 21945 Query 11820 GCCACCGAATGAAGTATGTCGGGCT-ACCTCCGC-TACACCCGGA--AGCAACTAACCCA 11875 ||| |||| || ||||| | |||| | | || | | ||| ||||| Sbjct 21944 ATATCCGCATGACCGCCGTGGGGCTGAAGCCCGCGTTCGAGCGCATCAAGAAC-AACCCG 21886 Query 11876 ATCCCATGGATCAACAACTGGTTGGTTAGTGATAATGTTCAAGTTGCTCCACAGGAAGCC 11935 || || |||||||||| |||||| || | || || || ||||| ||||||| | Sbjct 21885 ATTCCGTGGATCAACACGTGGTTGTCCTCGGACACGGTGCAGGTGGCTCCGCAGGAAGTC 21826 Query 11936 GA 11937 || Sbjct 21825 GA 21824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 342952915830383