Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq251 131 3e-25 >seq251 Length=2698768 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || ||||||||||| || |||| ||||| ||| ||||| ||| || |||||||| Sbjct 664769 CCGCCTCTCAATCGCAGGACCAAATGCAGTGTGCTTTCTTTCTGAATGTTGTAGTCGGAA 664710 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | ||| || | || || ||||| || || |||| ||| ||||| ||||| Sbjct 664709 AGGGTACGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAATCGCTGCTGATCTGGAGGG 664650 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 |||||||| |||||||| || || | |||| ||| ||||| ||||| | ||||||| Sbjct 664649 ATTCCTTCCTTATCTTGGATCTTAGCCTTTACATTCTCGATAGTGTCGGATGGCTCAACT 664590 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| || || || || || || || ||||| Sbjct 664589 TCCAGGGTGATGGTCTTACCGGTCAGAGTCTTGACGAAGATCTGCAT 664543 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| |||| || ||||| |||||||| | || || || || || |||||| Sbjct 663176 ATACCTCCTCGCAGACGAAGAACCAGATGAAGAGTGCTTTCCTTCTGGATGTTGTAGTCG 663117 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || |||||||| || || | ||| || || || Sbjct 663116 GAAAGAGTACGGCCATCTTCCAGCTGCTTACCGGCAAAGATCAAACGCTGCTGGTCTGGG 663057 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| || |||| || | ||| |||||||||||| | ||| Sbjct 663056 GGAATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTATCGGATGGCTCG 662997 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || || || || || || || || || ||||| Sbjct 662996 ACTTCAAGAGTAATGGTCTTTCCAGTCAGGGTCTTGACGAAGATCTGCAT 662947 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||||||| | || ||| || || || |||||||| | || | | Sbjct 664301 CGCAGAACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCA 664242 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || ||||| || || || | ||| ||||| || || |||||||| ||| Sbjct 664241 TCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCTTCCTTA 664182 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | ||| |||||||||||| | |||||| || || || || Sbjct 664181 TCCTGGATCTTAGCCTTGACGTTTTCAATAGTATCGGATGGCTCAACCTCCAGGGTGATG 664122 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || || || || || ||||| Sbjct 664121 GTCTTACCGGTCAGAGTCTTGACGAAGATCTGCAT 664087 Score = 89.7 bits (98), Expect = 9e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||||| | || | ||| || | || || |||||||| || || | | Sbjct 661988 ATGTTGTAGTCGGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGC 661929 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| || || || ||||| ||||| || || |||| || | |||| ||||||| Sbjct 661928 TGCTGATCTGGCGGGATACCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTA 661869 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| | |||||| || | || || || || || || | || || ||||| || ||| Sbjct 661868 TCGGATGGCTCAACCTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGC 661809 Query 193359 AT 193360 || Sbjct 661808 AT 661807 Score = 89.7 bits (98), Expect = 9e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||||| | || | ||| || | || || |||||||| || || | | Sbjct 662444 ATGTTGTAGTCGGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGC 662385 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| || || || ||||| ||||| || || |||| || | |||| ||||||| Sbjct 662384 TGCTGATCTGGCGGGATACCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTA 662325 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| | |||||| || | || || || || || || | || || ||||| || ||| Sbjct 662324 TCGGATGGCTCAACCTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGC 662265 Query 193359 AT 193360 || Sbjct 662264 AT 662263 Score = 89.7 bits (98), Expect = 9e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || |||||||| || | || | | ||| || | || || ||||| || || || | | Sbjct 662672 ATGTTATAGTCCGACAGGGTACGACCATCTTCCAGCTGCTTACCGGCGAAGATCAAACGC 662613 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| || || || ||||| ||||| || || |||| || | |||| ||||||| Sbjct 662612 TGCTGATCTGGCGGGATACCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTA 662553 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| | |||||| || | || || || || || || || || || || || || ||| Sbjct 662552 TCGGATGGCTCAACCTCCAAGGTGATGGTCTTTCCAGTCAGAGTCTTAACGAAGATCTGC 662493 Query 193359 AT 193360 || Sbjct 662492 AT 662491 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||||||| | ||| ||| || || || || || || | || | | | Sbjct 662249 CGCAGAACCAGATGAAGGGTACTCTCCTTCTGGATGTTGTAATCCGACAGGGTACGACCA 662190 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || ||||| || || || | ||| ||||| || || || ||||| ||| Sbjct 662189 TCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGCGGGATACCTTCCTTA 662130 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| || | |||| |||||||||||| | |||||| || | || || Sbjct 662129 TCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATG 662070 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || ||||| Sbjct 662069 GTCTTTCCAGTCAGAGTCTTAACGAAGATCTGCAT 662035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899600904300240