Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq4651 208 2e-49 seq377 178 4e-40 >seq4651 Length=474197 Score = 208 bits (230), Expect = 2e-49 Identities = 196/247 (79%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 40502 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40561 |||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||| | Sbjct 333812 GAAGTCGATGTCGAAGTCGGGCATCGACACCCGCTCGGGGTTCAGGAAGCGCTCGAACAG 333753 Query 40562 GAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40621 || ||| | ||||| ||||||||||||||| || |||||| |||||||| || Sbjct 333752 CAGCGCGTAGGCGAGCGGATCGAGGTCGGTGATCTTCAGCGAGTAGGCCACCAGCGAGCC 333693 Query 40622 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40681 || | ||||| ||||| || || ||| |||||||| | ||| ||||| ||||||| Sbjct 333692 CGCGCCGGAGCCCCGCCCCGGCCCCACCGGCACGCCGTTGTTCTTGGCCCACTGGATGAA 333633 Query 40682 GTCCGCGACGACGAGGAAGTACGACGGGAA-GCCCATCTGGATGATCATGTCGATCTCGT 40740 |||||| |||| |||||||| | |||||| ||||||||||||||| |||| ||||| Sbjct 333632 GTCCGCCACGATCAGGAAGTA-GCCGGGAAAGCCCATCTGGATGATGGTGTCAGTCTCGA 333574 Query 40741 ACTGGAG 40747 ||| ||| Sbjct 333573 ACTTGAG 333567 Score = 185 bits (204), Expect = 3e-42 Identities = 451/669 (67%), Gaps = 42/669 (6%) Strand=Plus/Minus Query 39176 CTCGCCCACGTTCTTCACGGCGGTCAGCCCGAAGCGGATCTCGTGCTCCCCGTTGGGGGT 39235 |||||||||| |||||||||| ||| ||| |||||||| || || | ||| || || Sbjct 335114 CTCGCCCACGCCCTTCACGGCGCCCAGGCCGTAGCGGATC--GT-CTTCGCGTCGGTGG- 335059 Query 39236 GAACGA----GCTGTTCGAGACCGACACGTCGGGCGGCAGGACCCGAAGGCCCATG-CGC 39290 | |||| | || |||| | |||||| |||||||| ||| | ||| || || Sbjct 335058 GCACGAAGCGGTAGTCCGAGGCGTTCACGTCCGGCGGCAGCACCGCGATGCCGTTGGCGA 334999 Query 39291 -CGAGACT-CGCCGAGGTACGTGGCCATCTTGTTCTTGTC---GTCGCCCACCGAGGTGA 39345 || | || || || | | || | | | | | ||||| |||| || | |||| Sbjct 334998 GCGTGTCTTCGTAGAAGATCTTGATCGTGTCGGTGTTGTCCAGGTCGGCCGACATGGTG- 334940 Query 39346 GCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGA 39405 ||||||||| | |||| || || | ||| |||||||| ||| |||| | || Sbjct 334939 -----GCCGCCATGAAGGCGGCGCAGTGGTAGGCCTTGAGCCACGCGGTGTGGTAGGTGA 334885 Query 39406 TGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCA 39465 | |||| || |||| ||||| |||||||||| |||| | |||||| | || || Sbjct 334884 CCACCGCGTAGGCGGCCGTGTGCGACTTGTTGAAGCCGTACTCGGCGAACTTGGTCATCA 334825 Query 39466 CGTCCCACA-CTGCCTGGATGGCACCG--TCCGAGTAGCCTCGCTCGCGCGCTCCCTTCT 39522 || | | |||| || || ||| || |||||| || ||| || || Sbjct 334824 GATCGAAGAGCTGCTCGGCGAGCGCCGGGTC---GTAGCCCTTCTGGCGGGCGCCGGCGG 334768 Query 39523 GGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAA 39582 || | || || | |||||||| ||||||||||||||||||||||||||||||| | Sbjct 334767 CGATGGTCTCGCGGTGCTTGGCCATCTCCTCGGGCTTCTTCTTGCCCATCGCCCGGCGCA 334708 Query 39583 GCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCT 39642 ||| |||||| ||||||||||| ||| | |||| ||| | | || | |||||||| Sbjct 334707 GCATGTCGGCGCCGCCGAGGGTGTAGCCGCCGATGATCTGGGAGATCTGCATCACCTGCT 334648 Query 39643 CCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGATCTCCGACAGGGACTCGGCCACCT 39702 ||||||| | ||| | | | |||| || ||||||| | ||| | | Sbjct 334647 CCTGGTACACGATCACCCCGTAGGTGGG------------CGACAGGCAGGCGGTGAGAT 334600 Query 39703 CGGGGTGGATCGGCGT-GATCGCCTGCTGCCCGTTCTTACGGAGGGCGTAGTTCGTGTGA 39761 | ||||||| | || ||| |||||||| || ||||| || ||| | || |||| Sbjct 334599 CCGGGTGGA-AGTAGTCGATGGCCTGCTGGCCCTTCTTCCGCAGGATGAAG-TCGTCCAC 334542 Query 39762 GA-CCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAA 39820 | |||| ||||| ||| ||||||||||| ||||||| ||||| |||||| ||||| Sbjct 334541 CATCCCCGAGCCCAGCGGGCCCGGACGGTAGAGCGCGAGCACGGCGATGATGTCTTCGAA 334482 Query 39821 GTTGTCCGG 39829 | ||| || Sbjct 334481 GCGGTCGGG 334473 >seq377 Length=293092 Score = 178 bits (196), Expect = 4e-40 Identities = 225/305 (74%), Gaps = 6/305 (2%) Strand=Plus/Plus Query 40425 GTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCTCG 40484 ||||| ||||||| || || || || || ||| || ||||||| |||||||| Sbjct 77840 GTCGCAATCTGCGACACGGCATCAGCGCCATATTTCTGGCGCACGTACTCGATCACCTTC 77899 Query 40485 CCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGT 40542 | || || | || ||||||||| |||| |||||||| ||||| ||||| |||| Sbjct 77900 CAGCGGTTGTCCTGGCA--GAAGTCGATATCGAAGTCGGGCATCGACACCCGCTCCGGGT 77957 Query 40543 TCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGAT-CCCGAGG 40601 ||||||| || ||||| | || ||| |||||||||| || ||||| || ||| | | Sbjct 77958 TCAGGAAGCGTTCGAACAGCAGCGCGTAGGCCAGCGGGTCCAGATCGGTAATGCCCAACG 78017 Query 40602 ACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTC 40661 | |||||| |||||||||||||| | || || || || || || ||| |||||||| Sbjct 78018 A-GTAGGCCACCAGCGAACCGGCACCCGAACCCCGGCCCGGCCCCACCGGTACGCCGTTG 78076 Query 40662 TCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGG 40721 | ||| |||||| |||||| || || |||| ||||||||| ||||| |||||||| Sbjct 78077 TTCTTGGCCCAGTTGATGAAATCGGCCACGATGAGGAAGTAACCGGGGAACCCCATCTGA 78136 Query 40722 ATGAT 40726 ||||| Sbjct 78137 ATGAT 78141 Score = 104 bits (114), Expect = 8e-18 Identities = 198/286 (69%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 39374 GTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTT 39433 ||||| ||| ||||| |||||| |||||| | | |||| ||||||| ||||| ||| Sbjct 76584 GTGCGCCTTGAGCCAGGCCGTGTGGTACGTCACCACCGCGTAGGCCGCCGTGTGCGACTT 76643 Query 39434 GTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCCCACA-CTGCCTGGATGGCA--CC 39490 ||||||| |||| | || ||| ||| || ||| ||| |||| | | || || Sbjct 76644 GTTGAAGCCGTACTCGGCAAACTTTTCCATCAGGTCGAACAACTGCATCGCCAGCTTGCC 76703 Query 39491 GTCCGAGTAGCCTCGCTCGCGCGCTCCCTT-CTGGAAGTTCACGAACTCCTTGGCCAGAA 39549 ||| | ||| | | ||| || | ||| || | | || | || ||||| Sbjct 76704 GTC---GATGCCGTTTTTGGTCGCACCTTCGCTGAAAATAC-CGCGGTGCTCGGCCATCT 76759 Query 39550 CCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACC 39609 ||||||| |||||||| |||||||||||||| |||| |||||| ||| || ||||| | Sbjct 76760 CCTCGGGTTTCTTCTTACCCATCGCCCGGCGCAGCATATCGGCCGCACCCAGCGTGTAAC 76819 Query 39610 CGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39655 || | || | ||||| | || | |||||| ||||| || | ||| Sbjct 76820 CGCCGATCAACTGCGAGATCTGCATCACCTGTTCCTGATACACGAT 76865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163875542250076