Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq4651 214 6e-51 seq377 181 3e-41 >seq4651 Length=474197 Score = 214 bits (236), Expect = 6e-51 Identities = 197/247 (80%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 |||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||| | Sbjct 333812 GAAGTCGATGTCGAAGTCGGGCATCGACACCCGCTCGGGGTTCAGGAAGCGCTCGAACAG 333753 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909 ||| ||| | ||||| ||||||||||||||| || |||||| |||||||| || Sbjct 333752 CAGCGCGTAGGCGAGCGGATCGAGGTCGGTGATCTTCAGCGAGTAGGCCACCAGCGAGCC 333693 Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40969 || | ||||| ||||| || || ||| |||||||| | ||| ||||| ||||||| Sbjct 333692 CGCGCCGGAGCCCCGCCCCGGCCCCACCGGCACGCCGTTGTTCTTGGCCCACTGGATGAA 333633 Query 40970 GTCCGCGACGACGAGGAAGTACGACGGGAA-GCCCATCTGGATGATCATGTCGATCTCGT 41028 |||||| |||| |||||||| | |||||| ||||||||||||||| |||| ||||| Sbjct 333632 GTCCGCCACGATCAGGAAGTA-GCCGGGAAAGCCCATCTGGATGATGGTGTCAGTCTCGA 333574 Query 41029 ACTGGAG 41035 ||| ||| Sbjct 333573 ACTTGAG 333567 Score = 181 bits (200), Expect = 3e-41 Identities = 450/669 (67%), Gaps = 42/669 (6%) Strand=Plus/Minus Query 39464 CTCGCCCACGTTCTTCACGGCGGTCAGCCCGAAGCGGATCTCGTGCTCCCCGTTGGGGGT 39523 |||||||||| |||||||||| ||| ||| |||||||| || || | ||| || || Sbjct 335114 CTCGCCCACGCCCTTCACGGCGCCCAGGCCGTAGCGGATC--GT-CTTCGCGTCGGTGG- 335059 Query 39524 GAACGA----GCTGTTCGAGACCGACACGTCGGGCGGCAGGACCCGCAGGCCCATG-CGC 39578 | |||| | || |||| | |||||| |||||||| ||| | ||| || || Sbjct 335058 GCACGAAGCGGTAGTCCGAGGCGTTCACGTCCGGCGGCAGCACCGCGATGCCGTTGGCGA 334999 Query 39579 -CGAGACT-CGCCGAGGTACGTGGCCATCTTGTTCTTGTC---GTCGCCCACCGAGGTGA 39633 || | || || || | | || | | | | | ||||| |||| || | |||| Sbjct 334998 GCGTGTCTTCGTAGAAGATCTTGATCGTGTCGGTGTTGTCCAGGTCGGCCGACATGGTG- 334940 Query 39634 GCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGA 39693 ||||||||| | |||| || || | ||| |||||||| ||| |||| | || Sbjct 334939 -----GCCGCCATGAAGGCGGCGCAGTGGTAGGCCTTGAGCCACGCGGTGTGGTAGGTGA 334885 Query 39694 TGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCA 39753 | |||| || |||| ||||| |||||||||| |||| | |||||| | || || Sbjct 334884 CCACCGCGTAGGCGGCCGTGTGCGACTTGTTGAAGCCGTACTCGGCGAACTTGGTCATCA 334825 Query 39754 CGTCCCACA-CTGCCTGGATGGCACCG--TCCGAGTAGCCTCGCTCGCGCGCTCCCTTCT 39810 || | | |||| || || ||| || |||||| || ||| || || Sbjct 334824 GATCGAAGAGCTGCTCGGCGAGCGCCGGGTC---GTAGCCCTTCTGGCGGGCGCCGGCGG 334768 Query 39811 GGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAA 39870 || | || || | |||||||| ||||||||||||||||||||||||||||||| | Sbjct 334767 CGATGGTCTCGCGGTGCTTGGCCATCTCCTCGGGCTTCTTCTTGCCCATCGCCCGGCGCA 334708 Query 39871 GCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCT 39930 ||| |||||| ||||||||||| ||| | |||| ||| | | || | ||| |||| Sbjct 334707 GCATGTCGGCGCCGCCGAGGGTGTAGCCGCCGATGATCTGGGAGATCTGCATCACCTGCT 334648 Query 39931 CCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGATCTCCGACAGGGACTCGGCCACCT 39990 ||||||| | ||| | | | |||| || ||||||| | ||| | | Sbjct 334647 CCTGGTACACGATCACCCCGTAGGTGGG------------CGACAGGCAGGCGGTGAGAT 334600 Query 39991 CGGGGTGGATCGGCGT-GATCGCCTGCTGCCCGTTCTTCCGGAGGGCGTAGTTCGTGTGA 40049 | ||||||| | || ||| |||||||| || |||||||| ||| | || |||| Sbjct 334599 CCGGGTGGA-AGTAGTCGATGGCCTGCTGGCCCTTCTTCCGCAGGATGAAG-TCGTCCAC 334542 Query 40050 GA-CCCCACGCCCATCGGACCAGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAA 40108 | |||| ||||| ||| || |||||||| ||||||| ||||| |||||| ||||| Sbjct 334541 CATCCCCGAGCCCAGCGGGCCCGGACGGTAGAGCGCGAGCACGGCGATGATGTCTTCGAA 334482 Query 40109 GTTGTCCGG 40117 | ||| || Sbjct 334481 GCGGTCGGG 334473 >seq377 Length=293092 Score = 181 bits (200), Expect = 3e-41 Identities = 226/305 (74%), Gaps = 6/305 (2%) Strand=Plus/Plus Query 40713 GTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCTCG 40772 ||||| ||||||| || || || || || ||| || ||||||| |||||||| Sbjct 77840 GTCGCAATCTGCGACACGGCATCAGCGCCATATTTCTGGCGCACGTACTCGATCACCTTC 77899 Query 40773 CCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGT 40830 | || || | || ||||||||| |||| |||||||| ||||| ||||| |||| Sbjct 77900 CAGCGGTTGTCCTGGCA--GAAGTCGATATCGAAGTCGGGCATCGACACCCGCTCCGGGT 77957 Query 40831 TCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGAT-CCCGAGG 40889 ||||||| || ||||| | ||| ||| |||||||||| || ||||| || ||| | | Sbjct 77958 TCAGGAAGCGTTCGAACAGCAGCGCGTAGGCCAGCGGGTCCAGATCGGTAATGCCCAACG 78017 Query 40890 ACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTC 40949 | |||||| |||||||||||||| | || || || || || || ||| |||||||| Sbjct 78018 A-GTAGGCCACCAGCGAACCGGCACCCGAACCCCGGCCCGGCCCCACCGGTACGCCGTTG 78076 Query 40950 TCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGG 41009 | ||| |||||| |||||| || || |||| ||||||||| ||||| |||||||| Sbjct 78077 TTCTTGGCCCAGTTGATGAAATCGGCCACGATGAGGAAGTAACCGGGGAACCCCATCTGA 78136 Query 41010 ATGAT 41014 ||||| Sbjct 78137 ATGAT 78141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164835488020276