Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_021306.1 Length=75736 Score E Sequences producing significant alignments: (Bits) Value seq4721 399 1e-106 >seq4721 Length=367317 Score = 399 bits (442), Expect = 1e-106 Identities = 591/832 (71%), Gaps = 8/832 (1%) Strand=Plus/Plus Query 65073 CCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 65132 |||||||||| | | ||| ||| || ||| |||||||| || || | ||||||| Sbjct 2099 CCACCGGCTCCCTGGGTCTCGACATCG-TCTCGGCATCGGCGGCCTGCCCCGCGGCCGGG 2157 Query 65133 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGG 65192 | |||||||||||||| || ||||| || || ||| | || || ||||| | || | Sbjct 2158 TCGTGGAAATCTACGGTCCCGAATCCTCCGGCAAGACGACCCTCACCCTCCAGGTCGTCG 2217 Query 65193 CCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 65252 || | ||||||| ||| |||| |||||||| ||||||||| || ||| | |||||| Sbjct 2218 CCGAGATGCAGAAGCTCGGCGGCACCGCCGCCTTCATCGACGCCGAACACGCGCTGGACG 2277 Query 65253 CTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACA 65312 |||||| || |||||| || || ||| | ||||| || | ||||| |||| Sbjct 2278 TCACCTACGCCCAGAAGCTCGGGGTCAACATCGGCGACCTCCTGATCTCCCAGCCCGACA 2337 Query 65313 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA--T 65370 | |||||||||||||| ||||||| ||| | || || || || | || ||| | | Sbjct 2338 CCGGCGAGCAGGCCCTCGAGATCGCCGACATGCTGGTGCGCTCCGGTG-GC-GTCGACGT 2395 Query 65371 CGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGG 65430 ||||| | ||||| || || ||||| ||| ||||| |||||||||| || || Sbjct 2396 GGTCGTGATCGACTCCGTCGCCGCCCTCACCCCGAAGGCCGAAATCGAAGGCGAGATGGG 2455 Query 65431 GGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGG 65490 ||| | | ||||||||| || ||||| ||| |||||| ||||||||||||||| Sbjct 2456 CGACCAGCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTCACCGC 2515 Query 65491 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 65550 || |||| |||||||||| ||| ||| |||||||| | || ||||||||| Sbjct 2516 CAACATCAAGCGCACCAACACCCTGGTCATCTTCATCAACCAGATCCGGATGAAGATCGG 2575 Query 65551 CAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGC 65610 | || | | |||| |||||||||||| |||||||| || | | ||||||||| Sbjct 2576 CGTGATGTTCGGCAGCCC---CGAGACCACCACCGGCGGCAACGCCCTCAAGTTCTACGC 2632 Query 65611 CTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGG 65670 || || || ||||| |||| ||||||| |||| ||| | ||| |||| |||| Sbjct 2633 GTCGGTGCGGATGGACATCCGCCGCATCGGCACCATCAAGAAGAACGACGAGGTGATCGG 2692 Query 65671 CAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGA 65730 | | ||| ||| |||||||||||||||||| | || |||||| |||| | || Sbjct 2693 CTCCGAAACCAAGGTCAAGGTCGTCAAGAACAAGGTCGCACCGCCGTTCCGCGAAACCCT 2752 Query 65731 GTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGT 65790 |||| | || ||||||| || |||| ||| || |||| ||| || ||||||||| ||| Sbjct 2753 GTTCGACATCCTGTACGGCGAAGGCACCTCCCGCGAGGGCGAGATCATCGACCTGGGCGT 2812 Query 65791 GTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGC 65850 | ||| | || | ||||| |||||||||| | ||||| | | |||| ||| Sbjct 2813 GCAGCACAAGTTCGTCGACAAGTCCGGCGCCTGGTACGCCTACGGCGGCGAGAAGATCGG 2872 Query 65851 TCAGGGCAAGCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGACATCACC 65902 ||||||||| ||| ||| | | | ||||||||||||||| ||||| || Sbjct 2873 CCAGGGCAAGGACAACGCCCGCGAATTCCTCAAGGCCAACCCGCACATCGCC 2924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242216356465469