Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3234 116 1e-20 seq162 96.9 1e-14 >seq3234 Length=3498553 Score = 116 bits (128), Expect = 1e-20 Identities = 184/261 (70%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| | ||||||||| |||||||||||| || || |||||||| ||| Sbjct 434732 TCCATAGCCTTGATCAGACGACGCTGGATATAACCAGTTTCAGCAGTCTTTACAGCAGTA 434673 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 ||||| | ||| ||||||| |||||||| |||||| | | ||| || ||| || || Sbjct 434672 TCAATCAAACCTTCACGACCTCCCATAGCGTGGAAGTAGAACTCGGTTGG-CGTCAGTCC 434614 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 ||| | || | || |||||||| | || || || || ||| |||| | || Sbjct 434613 GGCAAGGTACGAATTTTCCACGAAACCTCTCGATTCAGGACCATAATCGTCCTTGATGAA 434554 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 ||| || || || | || | ||| | || || ||||| || ||||||||||| || Sbjct 434553 GTGGGGTAGAGTGCGCTTACGGAAACCGAACGGAATTCGCTTACCTTCAACGTTCTGTTG 434494 Query 302814 TCCCAGGCACGAAATCATCTG 302834 |||| || | ||| | ||| Sbjct 434493 ACCCACACAAGCAATAACCTG 434473 >seq162 Length=2848369 Score = 96.9 bits (106), Expect = 1e-14 Identities = 376/578 (65%), Gaps = 31/578 (5%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| ||||| ||||||||| ||||| || |||||||| || |||||||| || Sbjct 1314709 GCACCGTGAGAAATTTGACAATCACGTTCCATCTCTCCGAAACGCAGGCCACCATCACGG 1314650 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 || | |||||| |||||| || ||| | || |||||| | || ||| Sbjct 1314649 GCACGACCCTCCATAGGCTGCCGGACCAGAATCTGCACCGGACCGCGAGCTCGCGAATGG 1314590 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCTC 251664 ||| || | |||||||||||||||||||| || | | |||||| | ||| | | Sbjct 1314589 ATCTTGTCGTCCACCATATGCTTGAGACGCTGATAATAAGTGGGACCCAGGAA----CAC 1314534 Query 251665 GAAGGCATTTGCTCT-----CCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATT 251719 |||| ||| ||| || || | |||| ||||| |||||||| ||| || Sbjct 1314533 CTGGGCA-TTGATCTTACGACCGGTGTGGCCGTTGTACATGACTTCGTTGCCACGCAGTT 1314475 Query 251720 CATAACCAAGTTTCTGTAGCTCTGAAGCAATAT----CACCAATCTTGAAT--TTGCTAA 251773 |||||| | ||| || | | ||| | ||| | | || ||| Sbjct 1314474 GATAACCGTACTCCTGGAGGAAAGTGGAAATCTTCTGCACGTTTACGGCATCGTTG---- 1314419 Query 251774 AACTG-GTGCCGTCTCCGTAAAGACCCAT-TTGAATCAACACTTTGCCTAAAAGTGTCTC 251831 ||| | ||| |||| || |||| | ||| | | || ||||| | ||| Sbjct 1314418 AACGGTGTGGCGTCACCAATTTCACCCTTGTTGGAAC-CCAGCTTGCCCTGGATACACTC 1314360 Query 251832 TTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGG 251891 ||| ||| | || |||||||| ||||| || || || |||||||| ||||| || Sbjct 1314359 GATCAAATGGCCAATTGTCATACGCGATGGAATGGCGTGCGGGTTGATGATAATGTCCGG 1314300 Query 251892 TTTCAGTCCATCAGCA-GTGAAGGGCATATCCTTTTCCT--CAATAAT-GTTTCCAATAG 251947 | ||||| || ||| |||||||||||||| ||||| | ||| | | | || | Sbjct 1314299 GGTAAGTCCTTC-GCATGTGAAGGGCATATC---TTCCTGGCGATACTGGATACCGCAGG 1314244 Query 251948 TTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTAC 252007 | ||||| || ||||| || ||| ||||| || ||||| ||| ||||| | Sbjct 1314243 TACCCTTCTGACCGTGGCGGGAAGCAAACTTGTCCCCAATCTGCGGAATACGAACCGAGC 1314184 Query 252008 GAAGGCGAACCTTACAGAAGTTGTAACCATCACCGTTG 252045 | | ||||| ||| ||||| ||||| || || | |||| Sbjct 1314183 GGACGCGAATCTTGCAGAACTTGTAGCCTTCGCTGTTG 1314146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471727894097109