Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq4651 214 6e-51 seq377 187 8e-43 >seq4651 Length=474197 Score = 214 bits (236), Expect = 6e-51 Identities = 197/247 (80%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| | Sbjct 333812 GAAGTCGATGTCGAAGTCGGGCATCGACACCCGCTCGGGGTTCAGGAAGCGCTCGAACAG 333753 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 ||| ||| | ||||| ||||||||||||||| || |||||| |||||||| || Sbjct 333752 CAGCGCGTAGGCGAGCGGATCGAGGTCGGTGATCTTCAGCGAGTAGGCCACCAGCGAGCC 333693 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 || | ||||||||||| || || ||| || ||||| | ||| ||||| ||||||| Sbjct 333692 CGCGCCGGAGCCCCGCCCCGGCCCCACCGGCACGCCGTTGTTCTTGGCCCACTGGATGAA 333633 Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAAC-CCCATCTGGATGATCATGTCGATCTCGT 40488 |||||| |||| |||||||| | |||||| |||||||||||||| |||| ||||| Sbjct 333632 GTCCGCCACGATCAGGAAGTA-GCCGGGAAAGCCCATCTGGATGATGGTGTCAGTCTCGA 333574 Query 40489 ACTGGAG 40495 ||| ||| Sbjct 333573 ACTTGAG 333567 Score = 181 bits (200), Expect = 3e-41 Identities = 450/669 (67%), Gaps = 42/669 (6%) Strand=Plus/Minus Query 38924 CTCGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCGGATCTCGTGCTCCCCGTTGGGGGT 38983 |||||||||| |||||||||| ||| ||| |||||||| || || | ||| || || Sbjct 335114 CTCGCCCACGCCCTTCACGGCGCCCAGGCCGTAGCGGATC--GT-CTTCGCGTCGGTGG- 335059 Query 38984 GAACGA----GCTGTTCGAGACCGACACGTCGGGCGGCAGGACCCGAAGGCCCATG-CGC 39038 | |||| | || |||| | |||||| |||||||| ||| | ||| || || Sbjct 335058 GCACGAAGCGGTAGTCCGAGGCGTTCACGTCCGGCGGCAGCACCGCGATGCCGTTGGCGA 334999 Query 39039 -CGTGCCT-CGCCGAGGTACGTGGCCATCTTGTTCTTGTC---GTCGCCCACCGAGGTGA 39093 |||| || || || | | || | | | | | ||||| |||| || | |||| Sbjct 334998 GCGTGTCTTCGTAGAAGATCTTGATCGTGTCGGTGTTGTCCAGGTCGGCCGACATGGTG- 334940 Query 39094 GCGCAGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGCGGTACGCGA 39153 ||||||||| | |||| || || | ||| | |||||| ||| |||| | || Sbjct 334939 -----GCCGCCATGAAGGCGGCGCAGTGGTAGGCCTTGAGCCACGCGGTGTGGTAGGTGA 334885 Query 39154 TGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGGGGACCAGCA 39213 | |||| || |||| ||||| |||||||||| |||| | ||||| | || || Sbjct 334884 CCACCGCGTAGGCGGCCGTGTGCGACTTGTTGAAGCCGTACTCGGCGAACTTGGTCATCA 334825 Query 39214 CGTCCCACA-CTGCCTGGATGGCACCG--TCCGAGTAGCCTCGCTCGCGCGCTCCCTTCT 39270 || | | |||| || || ||| || |||||| || ||| || || Sbjct 334824 GATCGAAGAGCTGCTCGGCGAGCGCCGGGTC---GTAGCCCTTCTGGCGGGCGCCGGCGG 334768 Query 39271 GGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAA 39330 || | || || | |||||||| ||||||||||||||||||||||||||||||| | Sbjct 334767 CGATGGTCTCGCGGTGCTTGGCCATCTCCTCGGGCTTCTTCTTGCCCATCGCCCGGCGCA 334708 Query 39331 GCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCT 39390 ||| |||||| || |||||||| ||| | |||| ||| | | || | |||||||| Sbjct 334707 GCATGTCGGCGCCGCCGAGGGTGTAGCCGCCGATGATCTGGGAGATCTGCATCACCTGCT 334648 Query 39391 CCTGGTAGATGATCAACTGGAATGTCGGGTCCAGGATCTCCGACAGGGACTCGGCCACCT 39450 ||||||| | ||||| | | | || || ||||||| | ||| | | Sbjct 334647 CCTGGTACACGATCACCCCGTAGGTGGG------------CGACAGGCAGGCGGTGAGAT 334600 Query 39451 CGGGGTGGATCGGCGT-GATCGCCTGCTGCCCGTTCTTCCGGAGGGCGTAGTTCGTGTGA 39509 | ||||||| | || ||| |||||||| || |||||||| ||| | || |||| Sbjct 334599 CCGGGTGGA-AGTAGTCGATGGCCTGCTGGCCCTTCTTCCGCAGGATGAAG-TCGTCCAC 334542 Query 39510 GA-CCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCTGAGATGTCCTCGAA 39568 | |||| ||||| ||| ||||||||||| ||||||| ||||| |||||| ||||| Sbjct 334541 CATCCCCGAGCCCAGCGGGCCCGGACGGTAGAGCGCGAGCACGGCGATGATGTCTTCGAA 334482 Query 39569 GTTGTCCGG 39577 | ||| || Sbjct 334481 GCGGTCGGG 334473 >seq377 Length=293092 Score = 187 bits (206), Expect = 8e-43 Identities = 227/305 (74%), Gaps = 6/305 (2%) Strand=Plus/Plus Query 40173 GTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATGACCTCG 40232 ||||| ||||||| || || || || || ||| || ||||||| ||| |||| Sbjct 77840 GTCGCAATCTGCGACACGGCATCAGCGCCATATTTCTGGCGCACGTACTCGATCACCTTC 77899 Query 40233 CCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGT 40290 | || || | || ||||||||| |||| |||||||| ||||| ||||| |||| Sbjct 77900 CAGCGGTTGTCCTGGCA--GAAGTCGATATCGAAGTCGGGCATCGACACCCGCTCCGGGT 77957 Query 40291 TCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGAT-CCCGAGG 40349 |||||||||| ||||| | ||| ||| |||||||||| || ||||| || ||| | | Sbjct 77958 TCAGGAAGCGTTCGAACAGCAGCGCGTAGGCCAGCGGGTCCAGATCGGTAATGCCCAACG 78017 Query 40350 ACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTC 40409 | |||||| |||||||||||||| | || ||||| || || || ||| || ||||| Sbjct 78018 A-GTAGGCCACCAGCGAACCGGCACCCGAACCCCGGCCCGGCCCCACCGGTACGCCGTTG 78076 Query 40410 TCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGG 40469 | ||| |||||| |||||| || || |||| ||||||||| |||||||||||||| Sbjct 78077 TTCTTGGCCCAGTTGATGAAATCGGCCACGATGAGGAAGTAACCGGGGAACCCCATCTGA 78136 Query 40470 ATGAT 40474 ||||| Sbjct 78137 ATGAT 78141 Score = 98.7 bits (108), Expect = 3e-16 Identities = 198/288 (69%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 39122 GTGCGTCTTCAACCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTT 39181 ||||| ||| | ||| |||||| |||||| | | |||| ||||||| ||||| ||| Sbjct 76584 GTGCGCCTTGAGCCAGGCCGTGTGGTACGTCACCACCGCGTAGGCCGCCGTGTGCGACTT 76643 Query 39182 GTTGAAGGCGTAGCCAGCGAAGGGGACCAGCACGTCCCACA-CTGCCTGGATGGCA--CC 39238 ||||||| |||| | || || ||| || ||| ||| |||| | | || || Sbjct 76644 GTTGAAGCCGTACTCGGCAAACTTTTCCATCAGGTCGAACAACTGCATCGCCAGCTTGCC 76703 Query 39239 GTCCGAGTAGCCTCGCTCGCGCGCTCCCTT-CTGGAAGTTCACGAACTCCTTGGCCAGAA 39297 ||| | ||| | | ||| || | ||| || | | || | || ||||| Sbjct 76704 GTC---GATGCCGTTTTTGGTCGCACCTTCGCTGAAAATAC-CGCGGTGCTCGGCCATCT 76759 Query 39298 CCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACC 39357 ||||||| |||||||| |||||||||||||| |||| |||||| |||||| ||||| | Sbjct 76760 CCTCGGGTTTCTTCTTACCCATCGCCCGGCGCAGCATATCGGCCGCACCCAGCGTGTAAC 76819 Query 39358 CGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGATCA 39405 || | || | ||| | | || | |||||| ||||| || | ||||| Sbjct 76820 CGCCGATCAACTGCGAGATCTGCATCACCTGTTCCTGATACACGATCA 76867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163315573884126