Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq888 100 3e-16 >seq888 Length=58548 Score = 100 bits (110), Expect = 3e-16 Identities = 225/336 (67%), Gaps = 4/336 (1%) Strand=Plus/Minus Query 43427 TTTGAAAAGCTGACTGAAAAACAACTGTCATTCTTCTGGCGACCGGAAGAAGTGGATCTG 43486 || || ||||||| ||||| || || || ||||||||||| ||||||||||| || | Sbjct 22776 TTCGAGAAGCTGATCGAAAAGCAGCTCTCCTTCTTCTGGCGCCCGGAAGAAGTAGACATC 22717 Query 43487 TCGATTGACCGTATGCAGTATGCGAAAATGCCGGAACATGAAAAAATCATTTTCGATTCT 43546 || ||||| | | || ||| ||||||| || || || ||| ||| Sbjct 22716 ACGCAGGACCGGCTCGATTACCAGAACCTGCCGGACCACGAGAAGCACATCTTCATCAGC 22657 Query 43547 AACCTGCAATATCAAACCCTACTGGATACCATTCAGGGACGCGGCCCTAACCTTGCATTT 43606 |||||| |||| || || || ||||| |||| ||||| ||| | || ||| | || || Sbjct 22656 AACCTGAAATACCAGACGCTGCTGGACTCCATCCAGGGGCGCAGTCCCAACATGGCGTTC 22597 Query 43607 CTCCCGAT--TGCCTCTGATGTATCAATGGAAACGTGGATCGAAACATGGGCGTTCAGTG 43664 || ||| | || | ||| | | |||| ||||||||||| || |||||||| | Sbjct 22596 CTGCCGCTGGTGTCGCTGCCCGAGC--TGGAGACGTGGATCGAGACCTGGGCGTTTTCCG 22539 Query 43665 AAACAATTCACAGTCGCAGTTATACGCACATTCAGCGCAACCTGCATATCGATCCGGCTA 43724 |||| || ||| ||| || || ||||| |||||| | | ||| || || Sbjct 22538 AAACGATCCACTCGCGCTCGTACACCCACATCATCCGCAACATCGTCAACGACCCCTCTG 22479 Query 43725 AAGAGTTCGACAAAATCCTTCGTAACGAAGCGATCA 43760 | ||||||| | ||| | || ||||| ||||| Sbjct 22478 TTGTGTTCGACGACATCGTGCGCAACGAGCAGATCA 22443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563764875137640