Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq817 125 9e-23 seq3158 122 1e-21 seq3116 102 1e-15 seq3013 96.9 4e-14 seq4738 91.5 2e-12 seq4282 89.7 6e-12 seq4284 86.0 8e-11 seq246 86.0 8e-11 >seq817 Length=58121 Score = 125 bits (138), Expect = 9e-23 Identities = 306/444 (69%), Gaps = 25/444 (6%) Strand=Plus/Plus Query 1726726 CACGCTCCCGTCGGTGCCGTTCTTGAAGCCGA-TGGCCAGCGGCAGTGCCGACGCCATCT 1726784 |||| | ||||||||||||||||||||||| | || || || ||| | || |||| || Sbjct 17762 CACGTTGCCGTCGGTGCCGTTCTTGAAGCCCACCGGGCA-CGACAGCCCGGAGGCCAGCT 17820 Query 1726785 CGCGGTGCACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTG 1726844 |||||||||||||||| ||||| ||||||||||| | |||||||| || | |||||| | Sbjct 17821 CGCGGTGCACCTGGCTTTCGGTGGTGCGCGCGCCGATCGCGCCCCAGGCGATCAGGTCGG 17880 Query 1726845 CCAAATA-AGGGGCCACCAGAGGACTGAGAAACTCGACGGCCACGGGCTGATCGACGGCG 1726903 | | || ||||| | | | ||| |||||| |||| | | | | | | || Sbjct 17881 CGACGTACTGGGGCGTGATCATGTC-GAGGAACTCGGTGGCCGCCGACAGGCC--CAGC- 17936 Query 1726904 ACGACGAGATCGCGCAACAGGCGGCGCGAC-GCCGTCAGGCCGTCGGCCAGGCGGCACGA 1726962 | | || || ||| |||||| | |||| |||||| ||| | | | Sbjct 17937 TCATTCACCTCCGACAGCAGCTGGCGCGCCAGCCG-CAGGCCCTCGTTGATCGCGAAGCT 17995 Query 1726963 CCCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTC 1727022 || || |||| || ||| || ||| |||||||| |||||||| ||||||||||| || Sbjct 17996 GCCATCCAGGTGCGGATCGTTGATCAGACCCTTCCAGCCGACGGTGGTGCGCGGCTTCTC 18055 Query 1727023 GACATAGGCGCGCATGACCACGCAAAGCGCGTCGCCGACCTC-GTC--TCGGACAAAGGC 1727079 || ||| | ||||| |||| || |||| | | || | | |||| | ||| Sbjct 18056 GAAATACACCCGCAT---CACGATCAGGAGGTCGTC--CTTCAGGCGGTCGG-CCTCGGC 18109 Query 1727080 GCGCAGGCGTCGGCCATAGTCGA-CGACGGCCGCCG-GGTCGTGCGCCGAACACGGACCA 1727137 |||||| ||| |||| || | || || ||||| |||||| ||||||||| | Sbjct 18110 CTTCAGGCGGCGGGCATATTCCATCGCCG--CGCCGTAGTCGTGGATCGAACACGGGC-- 18165 Query 1727138 ACGATAACCAGCAGCCGCCGGTCG 1727161 |||| |||| |||| |||||||| Sbjct 18166 -CGATCACCACCAGCAGCCGGTCG 18188 >seq3158 Length=1210988 Score = 122 bits (134), Expect = 1e-21 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||| || |||||| | ||||| ||| || | | ||||| ||| | Sbjct 452809 AGAAGCGCACAGATGACATCAGCTCTTGGGATGCGGACTTCCTCAAGGTCGACCAGGGAA 452750 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || || ||||||||| | || || |||||||| ||||||||| || || || | Sbjct 452749 CGCTGTTCGAGTTGATCTTGGCGGCGAACTACCTGGACATCAAGGGCCTACTGGACGTAA 452690 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 ||||| | || ||||||||||||||||| ||| | || ||||||||||| ||||| | Sbjct 452689 CATGCAAAACGGTCGCCAACATGATCAAGGGTAAGACCCCGGAGGAGATCCGGAAGACGT 452630 Query 1592286 TTAACATCAAGTACG 1592300 | ||||||||| ||| Sbjct 452629 TCAACATCAAGAACG 452615 >seq3116 Length=6082 Score = 102 bits (112), Expect = 1e-15 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 344151 CGCGGCGCGCGCCCTCCAAAGGGGCCAGTTGGTGGCCTTCCCCACCGAGACCGTCTACGG 344210 ||| |||||||| || | || ||| | || ||| | | ||||||||||| |||||||| Sbjct 1565 CGCCGCGCGCGCACTGCGCAGCGGCGCGCTGCTGGGCCTTCCCACCGAGACGGTCTACGG 1624 Query 344211 CCTCGGCGCCGACGCCACGTCTGACGAGGCCGTGCGGCGCATCTTTGAGGTCAAGGGCCG 344270 ||| | ||||||||| | |||| ||||||| || ||||| | | ||||||||| Sbjct 1625 CCTGGCGGCCGACGCCGCCAGCGACGCGGCCGTGGCGCAGATCTTCGCCGCCAAGGGCCG 1684 Query 344271 ACCCTCCAACAACCCGATCATTGTGCACGTGGCC 344304 ||| | || ||||| | || |||||||||||| Sbjct 1685 CCCCAGCGACCACCCGCTGATCGTGCACGTGGCC 1718 >seq3013 Length=6250 Score = 96.9 bits (106), Expect = 4e-14 Identities = 217/319 (68%), Gaps = 18/319 (6%) Strand=Plus/Plus Query 1632416 GGCTGTCTGATCGGGTGGGCGCGCCAGGGCGTGCTTCTGCTCAACACGTGCCTCACGGTC 1632475 ||| | ||| || |||||| ||| | |||||||| ||||| ||||| ||||| || Sbjct 5834 GGCAGCCTGGTCAAGTGGGCCCGCAACGGCGTGCTGCTGCTGAACACCACGCTCACCGTG 5893 Query 1632476 GAGGCCGGACATCCGGGGTCGCACCGCGACCGCGGCTGGGAGCCCTTTACCGACGCGGTG 1632535 || | | || || | ||| || | ||||||||| | | |||||||||||| Sbjct 5894 GAAGAGGCCCAGCCCGCCAGCCACGCCGGCAAGGGCTGGGAGGCGCTGACCGACGCGGTG 5953 Query 1632536 ATCTCGCTCGTGAGCAGGCGCTCGACGCACCCGGTGGTCTTTATGCTCTGGGGC-CGCGA 1632594 ||| | | |||| || ||| || ||| || | ||| || ||||| |||||| ||| | Sbjct 5954 ATCGCCCACGTGGGC--GCG-GCGGCGCGGCCCGCGGTGTTCATGCTGTGGGGCTCGC-A 6009 Query 1632595 CGCCCAGAGCAAGCGCAAGTTGATCGACCAGAACCGGCACAAGATCCTCGAGGCCGCCCA 1632654 ||| ||| |||||| | |||||||| | | |||||| | | ||| | | ||| Sbjct 6010 CGCGCAGTCCAAGCGGCCGCTGATCGACGCGCAGCGGCACCTGGTGCTCACGTCGAACCA 6069 Query 1632655 CCCGTCGCCCAAGTCGG--------CCACCAGCGGCTTT-TTCGGCTGCCGCCACTTTTC 1632705 ||| ||||| ||||| || || | | |||| |||||||| |||| |||| Sbjct 6070 CCCCTCGCCGCTGTCGGCGCTGCGCCCGCCGGTGCCTTTCATCGGCTGCGGCCA--TTTC 6127 Query 1632706 G--CAGGCCAACGCCTTTC 1632722 | |||||||| || |||| Sbjct 6128 GGCCAGGCCAAGGCATTTC 6146 >seq4738 Length=2816416 Score = 91.5 bits (100), Expect = 2e-12 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 || || |||||||| ||||| ||||| | |||||| |||||||| |||| ||| Sbjct 751287 AGCCGGACGGCGGTTTGGATTTCGCGGGATGTGATCGTCGAACGCTTGTTGTAGTGGGCC 751346 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 || ||| ||| |||| | | || || || | ||||||||||| || |||||||| Sbjct 751347 AGGCGGGAGGCTTCGGCGGCAATACGCTCAAAGATGTCGTTGACGAAGCTGTTCATGATG 751406 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| | || || | ||| ||||||||| || ||||| | ||||||||||||| Sbjct 751407 CTCATGGCTTTCGACGAAACGCCAGTGTCGGGGTGAACTTGCTTCAACACCTTGTAGATG 751466 Score = 91.5 bits (100), Expect = 2e-12 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 || || |||||||| ||||| ||||| | |||||| |||||||| |||| ||| Sbjct 765861 AGCCGGACGGCGGTTTGGATTTCGCGGGATGTGATCGTCGAACGCTTGTTGTAGTGGGCC 765920 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 || ||| ||| |||| | | || || || | ||||||||||| || |||||||| Sbjct 765921 AGGCGGGAGGCTTCGGCGGCAATACGCTCAAAGATGTCGTTGACGAAGCTGTTCATGATG 765980 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| | || || | ||| ||||||||| || ||||| | ||||||||||||| Sbjct 765981 CTCATGGCTTTCGACGAAACGCCAGTGTCGGGGTGAACTTGCTTCAACACCTTGTAGATG 766040 Score = 91.5 bits (100), Expect = 2e-12 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 || || |||||||| ||||| ||||| | |||||| |||||||| |||| ||| Sbjct 809397 AGCCGGACGGCGGTTTGGATTTCGCGGGATGTGATCGTCGAACGCTTGTTGTAGTGGGCC 809456 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 || ||| ||| |||| | | || || || | ||||||||||| || |||||||| Sbjct 809457 AGGCGGGAGGCTTCGGCGGCAATACGCTCAAAGATGTCGTTGACGAAGCTGTTCATGATG 809516 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| | || || | ||| ||||||||| || ||||| | ||||||||||||| Sbjct 809517 CTCATGGCTTTCGACGAAACGCCAGTGTCGGGGTGAACTTGCTTCAACACCTTGTAGATG 809576 Score = 91.5 bits (100), Expect = 2e-12 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 || || |||||||| ||||| ||||| | |||||| |||||||| |||| ||| Sbjct 871917 AGCCGGACGGCGGTTTGGATTTCGCGGGATGTGATCGTCGAACGCTTGTTGTAGTGGGCC 871976 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 || ||| ||| |||| | | || || || | ||||||||||| || |||||||| Sbjct 871977 AGGCGGGAGGCTTCGGCGGCAATACGCTCAAAGATGTCGTTGACGAAGCTGTTCATGATG 872036 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| | || || | ||| ||||||||| || ||||| | ||||||||||||| Sbjct 872037 CTCATGGCTTTCGACGAAACGCCAGTGTCGGGGTGAACTTGCTTCAACACCTTGTAGATG 872096 >seq4282 Length=892503 Score = 89.7 bits (98), Expect = 6e-12 Identities = 141/198 (71%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 1592104 CCAGAAGCGCACCGACGACATCT-CGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGC 1592162 ||||| ||| ||||| ||||||| || | ||||| |||||| | |||||| ||| Sbjct 93543 CCAGA-GCGTACCGATGACATCTGCGAC-TGGGATCGGGAGTTCCTCTGCGTCGACCAGG 93486 Query 1592163 CCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATC 1592222 | || || ||| | || || ||||||||||| || |||||| ||||| ||| Sbjct 93485 GGATGCTGTTCGAGATCATACTGGCCGCCAACTATCTGGACATCCGAGAGCTGCTAGATT 93426 Query 1592223 TTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGA 1592282 | |||||| | |||||||||||||||||||| ||| | || || | || | || | Sbjct 93425 TAACGTGCAAAACGGTGGCCAACATGATCAAGGGAAAGACCCCGGACCAAATTAGGAAAA 93366 Query 1592283 CCTTTAACATCAAGTACG 1592300 | || ||||||| | ||| Sbjct 93365 CTTTCAACATCAGGAACG 93348 >seq4284 Length=891408 Score = 86.0 bits (94), Expect = 8e-11 Identities = 152/221 (69%), Gaps = 7/221 (3%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||||| ||||||| || | || || ||||| || || |||||| Sbjct 85347 CCTTCGTCACGTGAGATCAATTCGTTGGAGAATGTTAGCCCAGGCATCAGTCCACGCTTC 85288 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || | ||||||||||| |||||| || || || || || || |||||||| ||| Sbjct 85287 TTCAACCAAAAGATGGATGCGAAACTTCCACTAAAGAAAATACCTTCCACGGCGGCGAAG 85228 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG--ATCCACTTCATCGCCC 869357 | | || || || | ||| | |||| | | ||| ||||| |||| |||| Sbjct 85227 GCTACGACGCGTTCTCCGAAGTT-----GGCCTTTTTGCTTGAAATCCAGTTCAATGCCC 85173 Query 869358 AGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 |||| || || ||| |||| | |||| | ||||||||| Sbjct 85172 AGTCAGCTTTCTTCTTCACACAGGGCAGATTATCGATGGCG 85132 >seq246 Length=4759463 Score = 86.0 bits (94), Expect = 8e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 || || |||||||| || || ||||| | ||| || ||||||||| |||| || Sbjct 3650731 AGACGGACGGCGGTTTGAATTTCGCGGGAAGTGATTGTCGAGCGCTTGTTGTAGTGAGCA 3650790 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 |||||| ||| |||| | | || || || | ||||||||||| || |||||||| Sbjct 3650791 AGACGGGAGGCTTCGGCGGCAATACGTTCAAAGATGTCGTTGACGAAGCTGTTCATGATG 3650850 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| | ||| || | ||| |||||| || || ||||| | ||||||||||||| Sbjct 3650851 CTCATAGCCTTTGAAGAAACGCCAGTGTCGGGATGGACTTGCTTCAACACCTTGTAGATG 3650910 Score = 86.0 bits (94), Expect = 8e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 || || |||||||| || || ||||| | ||| || ||||||||| |||| || Sbjct 3666008 AGACGGACGGCGGTTTGAATTTCGCGGGAAGTGATTGTCGAGCGCTTGTTGTAGTGAGCA 3666067 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 |||||| ||| |||| | | || || || | ||||||||||| || |||||||| Sbjct 3666068 AGACGGGAGGCTTCGGCGGCAATACGTTCAAAGATGTCGTTGACGAAGCTGTTCATGATG 3666127 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| | ||| || | ||| |||||| || || ||||| | ||||||||||||| Sbjct 3666128 CTCATAGCCTTTGAAGAAACGCCAGTGTCGGGATGGACTTGCTTCAACACCTTGTAGATG 3666187 Score = 86.0 bits (94), Expect = 8e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 || || |||||||| || || ||||| | ||| || ||||||||| |||| || Sbjct 3675333 AGACGGACGGCGGTTTGAATTTCGCGGGAAGTGATTGTCGAGCGCTTGTTGTAGTGAGCA 3675392 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 |||||| ||| |||| | | || || || | ||||||||||| || |||||||| Sbjct 3675393 AGACGGGAGGCTTCGGCGGCAATACGTTCAAAGATGTCGTTGACGAAGCTGTTCATGATG 3675452 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| | ||| || | ||| |||||| || || ||||| | ||||||||||||| Sbjct 3675453 CTCATAGCCTTTGAAGAAACGCCAGTGTCGGGATGGACTTGCTTCAACACCTTGTAGATG 3675512 Score = 86.0 bits (94), Expect = 8e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 || || |||||||| || || ||||| | ||| || ||||||||| |||| || Sbjct 3692690 AGACGGACGGCGGTTTGAATTTCGCGGGAAGTGATTGTCGAGCGCTTGTTGTAGTGAGCA 3692749 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 |||||| ||| |||| | | || || || | ||||||||||| || |||||||| Sbjct 3692750 AGACGGGAGGCTTCGGCGGCAATACGTTCAAAGATGTCGTTGACGAAGCTGTTCATGATG 3692809 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| | ||| || | ||| |||||| || || ||||| | ||||||||||||| Sbjct 3692810 CTCATAGCCTTTGAAGAAACGCCAGTGTCGGGATGGACTTGCTTCAACACCTTGTAGATG 3692869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106748818302969