Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq196 205 8e-48 seq4287 84.2 2e-11 >seq196 Length=5167134 Score = 205 bits (226), Expect = 8e-48 Identities = 176/218 (81%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 ||||| || | ||| || ||||||||||||||||| || |||||||| || || || | Sbjct 4883772 TTGTAGTCAAACTGAGTCTGCGCGCCCAGCTCGCAACCAAAGTACTTGGTTGGATACGTT 4883831 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 |||||||| |||| || || | |||| ||||||||||||||| |||||||||||| Sbjct 4883832 GCCGGACGGCCAATTGCACGCGCCACGTCGGCCATGTTGACGATGACCGTCTTGATGCCG 4883891 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 || |||||||||||||||||||| || || |||||||| || ||||||||| | ||| Sbjct 4883892 TTTCCCTTTCCTTCGACCTTGGCATTAATCCGGGGCATTTTATAACGGTAGAACACATCC 4883951 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGGC 34649 |||||||||||||| ||||| || || ||||| |||| Sbjct 4883952 GCCACATTGCGGTTGACGTTTACGGTACCCATGATGGC 4883989 Score = 123 bits (136), Expect = 2e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 34255 CCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATG 34314 ||||| | ||||| |||||||| ||||| |||| | ||| || | |||||||| Sbjct 4874547 CCGTGGAATCCGCACGCTTTGCAACCCTGCGAGATGGTACCCTTCTTCGACGACACGATC 4874606 Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || ||||| || || || || || ||||| || | || |||||||||||||||||||| Sbjct 4874607 AGATCAGTTTCGGGATTATCGCACTCCGGGCAAAGAACGAACTTGCGGATGAAACCATCC 4874666 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 ||||| || || | ||| || |||||| || || ||||||||||| ||||| || Sbjct 4874667 AGCAGATCTTGCAGCTTGTTGGCGTCGTGCGATCCATTGACGATGAAGCGTTCATT 4874722 >seq4287 Length=5058281 Score = 84.2 bits (92), Expect = 2e-11 Identities = 222/335 (66%), Gaps = 7/335 (2%) Strand=Plus/Plus Query 107177 CACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCCGGTGAA 107236 || || |||||| | ||||| || || |||| || |||||| || || || || || Sbjct 1363576 CATGGATTCCACATCCACGAGTTCGGTGACAACACCAACGGATGCACCTCGGCTGGACCG 1363635 Query 107237 CACTTCAATCCCACATACCAAA-ATCACGGTGCGCCCGACGCCGTAGAAAGGCACGTCGG 107295 |||||||| ||| || ||| | ||||||| ||||| |||| ||||| |||| ||| Sbjct 1363636 CACTTCAA-CCCGCACGGCAAGGAGCACGGTGGCCCCGATGCCGCCGAAAGACACGCCGG 1363694 Query 107296 CGATCTGGGCAACGTCCGCTCCGCGGGCTGCACCG-CGCTCACGCCTATAGATATAAGCG 107354 || |||||||||| | ||| ||| || | ||| | | | ||||| || Sbjct 1363695 AGACTTGGGCAACGTTGTCGCCGATGGCAGCGGAGTCGCCAAGGTC----GATATCTCCG 1363750 Query 107355 ACAACGTGATGAGCTTGTTTGGTCCGCTGAGCATATTGGGTCGCAGCGTAGTAGTGCACA 107414 ||| | ||| ||||| || ||||||||||| |||| |||| || || || || Sbjct 1363751 ACAGCCAGATTTCCTTGTCCGGACCGCTGAGCATCCTGGGACGCACTGTGGTCGTTCATG 1363810 Query 107415 CGAACCGGGACGACCTCGGCCTGACCGACCACCCTCTCAGCAAGATTACGGGCAACTCGG 107474 | | | || || | |||||| | ||| | |||||| ||| || ||| | | Sbjct 1363811 CCGATCCTGATGATTTGGGCCTGGGTGGACACGAATTGAGCAAGTCTACCGGGAACGCCG 1363870 Query 107475 GCGGTCGCTTAGGCTGCGGCATCATCGGGATGTGC 107509 | | ||| | | ||||| |||| ||||| ||| Sbjct 1363871 GTGCTCGTCTTGCTTGCGGTGTCATTGGGATTTGC 1363905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412817665121201