Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_022343.1 Length=159991 Score E Sequences producing significant alignments: (Bits) Value seq888 129 6e-25 >seq888 Length=58548 Score = 129 bits (142), Expect = 6e-25 Identities = 298/439 (68%), Gaps = 10/439 (2%) Strand=Plus/Minus Query 15050 CTTCCGACCCCCATCATGGCAGGCGTTCGTACTCCTACCCGTCAGTTCAGTTCATGCGTT 15109 || || |||||||| ||| | ||||| || || || | || |||||||| || ||||| Sbjct 24558 CTGCCTACCCCCATTATGTCCGGCGTGCGCACGCCCATGCGCCAGTTCAGCTCGTGCGTG 24499 Query 15110 CTGATCAAAACTGGCGACACGCTGGATTCCATCAACGCAACCGCCAAATCTATCGTAGAC 15169 |||||| || | ||||| |||||| ||||||||| ||| ||| | ||||| | Sbjct 24498 CTGATCGAATGCGACGACAGCCTGGATGGCATCAACGCCACCACCAGCGCCATCGTCAAG 24439 Query 15170 TATGTGAGCAAGCGTGCTGGCATCGGATTTGACGTTGGTGCAATTCGCGGTATCGGCAGT 15229 || ||| |||| ||||||||||| | | | || || || | | ||||| Sbjct 24438 TACGTGTCGCAGCGCGCTGGCATCGGCATCAATGGCGGCCGTATCCGTGCCGTGGGCAGC 24379 Query 15230 CCTATCCGGGGCGGAGAGATGGTCCACACTGGTCTG-GTTCCATTCATCAAATATCTGAC 15288 ||||||||||| || | ||||| || ||| | || ||| || || || | | Sbjct 24378 GAAATCCGGGGCGGCGAAGCGCAGCACAC-GGGCTGCCTGCCCTTCTTC-AAGATGTTCC 24321 Query 15289 CGG-GGCACTGAAGTCGTGCTCTCAGGGCGGTATTCGCGGTGGTGCTGCTACAGCTTATA 15347 || || | ||||| ||||| ||||||||| | || || || || || || ||| | Sbjct 24320 AGGCTGCCGTCAAGTCCTGCTCGCAGGGCGGTGTGCGGGGAGGGGCGGCCAC-GCTGTTC 24262 Query 15348 T-CCCGCTGTGGCATTACCAGTTCGA--CGATGTCGTTGTGTTGAAGAACAACCGTGGTA 15404 | ||| |||||||| | | || || || | ||| | ||||||||||| ||| Sbjct 24261 TACCCCCTGTGGCACCTGGAAGTGGAATCGCTG--CTGGTGCTCAAGAACAACCGCGGTG 24204 Query 15405 CGGAAGAAAACCGCGAGCGCCGTATCGACTATGGTATTCAGATCAACCGCGTCATGTTTG 15464 ||| ||||||||| |||| | | ||||||||| | |||||||| ||| | ||| Sbjct 24203 TGGAGGAAAACCGCATTCGCCATTTGGACTATGGTGTGCAGATCAATCGCACCCTGTACC 24144 Query 15465 AACGTCTGGTCAACAAACA 15483 | || ||| |||| || || Sbjct 24143 AGCGCCTGATCAAGAACCA 24125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511812764523720