Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_022969.1 Length=76217 Score E Sequences producing significant alignments: (Bits) Value seq4721 399 1e-106 >seq4721 Length=367317 Score = 399 bits (442), Expect = 1e-106 Identities = 591/832 (71%), Gaps = 8/832 (1%) Strand=Plus/Plus Query 66122 CCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 66181 |||||||||| | | ||| ||| || ||| |||||||| || || | ||||||| Sbjct 2099 CCACCGGCTCCCTGGGTCTCGACATCG-TCTCGGCATCGGCGGCCTGCCCCGCGGCCGGG 2157 Query 66182 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGG 66241 | |||||||||||||| || ||||| || || ||| | || || ||||| | || | Sbjct 2158 TCGTGGAAATCTACGGTCCCGAATCCTCCGGCAAGACGACCCTCACCCTCCAGGTCGTCG 2217 Query 66242 CCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 66301 || | ||||||| ||| |||| |||||||| ||||||||| || ||| | |||||| Sbjct 2218 CCGAGATGCAGAAGCTCGGCGGCACCGCCGCCTTCATCGACGCCGAACACGCGCTGGACG 2277 Query 66302 CTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACA 66361 |||||| || |||||| || || ||| | ||||| || | ||||| |||| Sbjct 2278 TCACCTACGCCCAGAAGCTCGGGGTCAACATCGGCGACCTCCTGATCTCCCAGCCCGACA 2337 Query 66362 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA--T 66419 | |||||||||||||| ||||||| ||| | || || || || | || ||| | | Sbjct 2338 CCGGCGAGCAGGCCCTCGAGATCGCCGACATGCTGGTGCGCTCCGGTG-GC-GTCGACGT 2395 Query 66420 CGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGG 66479 ||||| | ||||| || || ||||| ||| ||||| |||||||||| || || Sbjct 2396 GGTCGTGATCGACTCCGTCGCCGCCCTCACCCCGAAGGCCGAAATCGAAGGCGAGATGGG 2455 Query 66480 GGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGG 66539 ||| | | ||||||||| || ||||| ||| |||||| ||||||||||||||| Sbjct 2456 CGACCAGCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTCACCGC 2515 Query 66540 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 66599 || |||| |||||||||| ||| ||| |||||||| | || ||||||||| Sbjct 2516 CAACATCAAGCGCACCAACACCCTGGTCATCTTCATCAACCAGATCCGGATGAAGATCGG 2575 Query 66600 CAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGC 66659 | || | | |||| ||||||||||| |||||||| || | | ||||||||| Sbjct 2576 CGTGATGTTCGGCAGCCCC---GAGACCACCACCGGCGGCAACGCCCTCAAGTTCTACGC 2632 Query 66660 CTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGG 66719 || || || ||||| |||| ||||||| |||| ||| | ||| |||| |||| Sbjct 2633 GTCGGTGCGGATGGACATCCGCCGCATCGGCACCATCAAGAAGAACGACGAGGTGATCGG 2692 Query 66720 CAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGA 66779 | | ||| ||| |||||||||||||||||| | || |||||| |||| | || Sbjct 2693 CTCCGAAACCAAGGTCAAGGTCGTCAAGAACAAGGTCGCACCGCCGTTCCGCGAAACCCT 2752 Query 66780 GTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGT 66839 |||| | || ||||||| || |||| ||| || |||| ||| || ||||||||| ||| Sbjct 2753 GTTCGACATCCTGTACGGCGAAGGCACCTCCCGCGAGGGCGAGATCATCGACCTGGGCGT 2812 Query 66840 GTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGC 66899 | ||| | || | ||||| |||||||||| | ||||| | | |||| ||| Sbjct 2813 GCAGCACAAGTTCGTCGACAAGTCCGGCGCCTGGTACGCCTACGGCGGCGAGAAGATCGG 2872 Query 66900 CCAGGGCAAGCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGACATCACC 66951 |||||||||| ||| ||| | | | ||||||||||||||| ||||| || Sbjct 2873 CCAGGGCAAGGACAACGCCCGCGAATTCCTCAAGGCCAACCCGCACATCGCC 2924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243755467228906