Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_022988.1 Length=74210 Score E Sequences producing significant alignments: (Bits) Value seq4721 399 1e-106 >seq4721 Length=367317 Score = 399 bits (442), Expect = 1e-106 Identities = 591/832 (71%), Gaps = 8/832 (1%) Strand=Plus/Plus Query 64681 CCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 64740 |||||||||| | | ||| ||| || ||| |||||||| || || | ||||||| Sbjct 2099 CCACCGGCTCCCTGGGTCTCGACATCG-TCTCGGCATCGGCGGCCTGCCCCGCGGCCGGG 2157 Query 64741 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGG 64800 | |||||||||||||| || ||||| || || ||| | || || ||||| | || | Sbjct 2158 TCGTGGAAATCTACGGTCCCGAATCCTCCGGCAAGACGACCCTCACCCTCCAGGTCGTCG 2217 Query 64801 CCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 64860 || | ||||||| ||| |||| |||||||| ||||||||| || ||| | |||||| Sbjct 2218 CCGAGATGCAGAAGCTCGGCGGCACCGCCGCCTTCATCGACGCCGAACACGCGCTGGACG 2277 Query 64861 CTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACA 64920 |||||| || |||||| || || ||| | ||||| || | ||||| |||| Sbjct 2278 TCACCTACGCCCAGAAGCTCGGGGTCAACATCGGCGACCTCCTGATCTCCCAGCCCGACA 2337 Query 64921 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA--T 64978 | |||||||||||||| ||||||| ||| | || || || || | || ||| | | Sbjct 2338 CCGGCGAGCAGGCCCTCGAGATCGCCGACATGCTGGTGCGCTCCGGTG-GC-GTCGACGT 2395 Query 64979 CGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGG 65038 ||||| | ||||| || || ||||| ||| ||||| |||||||||| || || Sbjct 2396 GGTCGTGATCGACTCCGTCGCCGCCCTCACCCCGAAGGCCGAAATCGAAGGCGAGATGGG 2455 Query 65039 GGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGG 65098 ||| | | ||||||||| || ||||| ||| |||||| ||||||||||||||| Sbjct 2456 CGACCAGCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTCACCGC 2515 Query 65099 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 65158 || |||| |||||||||| ||| ||| |||||||| | || ||||||||| Sbjct 2516 CAACATCAAGCGCACCAACACCCTGGTCATCTTCATCAACCAGATCCGGATGAAGATCGG 2575 Query 65159 CAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGC 65218 | || | | |||| ||||||||||| |||||||| || | | ||||||||| Sbjct 2576 CGTGATGTTCGGCAGCCCC---GAGACCACCACCGGCGGCAACGCCCTCAAGTTCTACGC 2632 Query 65219 CTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGG 65278 || || || ||||| |||| ||||||| |||| ||| | ||| |||| |||| Sbjct 2633 GTCGGTGCGGATGGACATCCGCCGCATCGGCACCATCAAGAAGAACGACGAGGTGATCGG 2692 Query 65279 CAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGA 65338 | | ||| ||| |||||||||||||||||| | || |||||| |||| | || Sbjct 2693 CTCCGAAACCAAGGTCAAGGTCGTCAAGAACAAGGTCGCACCGCCGTTCCGCGAAACCCT 2752 Query 65339 GTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGT 65398 |||| | || ||||||| || |||| ||| || |||| ||| || ||||||||| ||| Sbjct 2753 GTTCGACATCCTGTACGGCGAAGGCACCTCCCGCGAGGGCGAGATCATCGACCTGGGCGT 2812 Query 65399 GTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGC 65458 | ||| | || | ||||| |||||||||| | ||||| | | |||| ||| Sbjct 2813 GCAGCACAAGTTCGTCGACAAGTCCGGCGCCTGGTACGCCTACGGCGGCGAGAAGATCGG 2872 Query 65459 CCAGGGCAAGCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGACATCACC 65510 |||||||||| ||| ||| | | | ||||||||||||||| ||||| || Sbjct 2873 CCAGGGCAAGGACAACGCCCGCGAATTCCTCAAGGCCAACCCGCACATCGCC 2924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237333439573567