Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq476 145 2e-30 >seq476 Length=182463 Score = 145 bits (160), Expect = 2e-30 Identities = 197/271 (73%), Gaps = 19/271 (7%) Strand=Plus/Minus Query 23461 ATTTCGGTGGTGTAGTTGGTCGCGCCGTCTTTTTCC---CACTTGCGTGTCTGCAGCTTG 23517 |||||||||||||| | | |||||| || ||| |||||||| || |||| | Sbjct 52938 ATTTCGGTGGTGTAACGGTCCTGGCCGTCCTTGTCCTGCCACTTGCGGGTGCGCAGGGAG 52879 Query 23518 CCGATGATCGCGCATTCACTT-----CCCTTGCGCAGATACTCGCCGGCAATCTCGGCGA 23572 || || | ||| ||| | ||||||||||| |||| |||||| |||||||||| Sbjct 52878 CCT----TC-CACATACACCTGGCTGCCCTTGCGCAGGTACTGGCCGGCGATCTCGGCGA 52824 Query 23573 CCTTGCCGAAGAACACGACGCGGTGCCATTCGGTCTTTTCCTTGCGC---TCGCCGGTCT 23629 ||||||||||||||| |||||||||||||||| | ||| |||| |||||||| Sbjct 52823 GCTTGCCGAAGAACACCACGCGGTGCCATTCGG---TGGCCTCGCGCTTTTCGCCGGTGG 52767 Query 23630 GCTTGTCCTTCCAGGTTTCCGACGTGGCCAGGCTGATGTTGCAGACGGCATCGCCGTTTT 23689 |||||| |||| | || | |||||||| |||||||||||| || |||||| | Sbjct 52766 CCTTGTCGCGCCAGTTGTCGGTGGTGGCCAGCGTGATGTTGCAGATCGCGTCGCCGCTCG 52707 Query 23690 GCAGGTAGCGCACTTCCGGGTCATTACCCAG 23720 | |||||| ||| ||||| || ||||| Sbjct 52706 GGGCGTAGCGGGTTTCGGGGTCCTTGCCCAG 52676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139275331979084