Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq4367 91.5 1e-13 seq4287 84.2 2e-11 >seq4367 Length=838166 Score = 91.5 bits (100), Expect = 1e-13 Identities = 225/336 (67%), Gaps = 9/336 (3%) Strand=Plus/Plus Query 105087 CACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGAG 105146 || || || ||| | ||||||||||| || | || |||||| ||||| || || || | Sbjct 422158 CATGGATTCCACATCCACGAGTTCGGTGACAACACCAACGGATGCACCTCGGCTGGACCG 422217 Query 105147 CACTTCAACCC-TACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGG 105205 ||||||||||| ||| || | | ||||| | || || ||||| ||||| |||| ||| Sbjct 422218 CACTTCAACCCGCACG-GCAAGGAGCACGGTGGCCCCGATGCCGCCGAAAGACACGCCGG 422276 Query 105206 CGACCTGGGCAATGTCCGCTCCGCGGGATGCAGCGCGCTCACGCCTA--TAGACATCAGC 105263 ||| ||||||| || | ||| | |||||| | |||| | | || ||| | Sbjct 422277 AGACTTGGGCAACGTTGTCGCCGATG---GCAGCGGAGT--CGCCAAGGTCGATATCTCC 422331 Query 105264 GACAATTTAATAAGTTTGTTTGGTCCTCTGAGCATATTGGGCCGCAGCTTGGTCGTGCAC 105323 |||| | || |||| || || |||||||| |||| |||| ||||||| || Sbjct 422332 GACAGTCAGATTTCCTTGTCCGGACCGCTGAGCATCCTGGGACGCACTGTGGTCGTTCAT 422391 Query 105324 ACGCATCGCGATGACCTCGGCTTGACAGACCACCCACTTAGCAAAATTACGGGCAACGCG 105383 | ||| ||||| | ||| || | ||| | | ||||| ||| || ||||| Sbjct 422392 GCCGATCCTGATGATTTGGGCCTGGGTGGACACGAATTGAGCAAGTCTACCGGAAACGCC 422451 Query 105384 GGCGGCCGGTTGGGGTGCGGCATCATCGGAATGTGC 105419 || | || ||| ||||| |||| || || ||| Sbjct 422452 GGTGCTCGTCTGGCTTGCGGTGTCATTGGGATTTGC 422487 >seq4287 Length=5058281 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 105087 CACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGAG 105146 || || || ||| | ||||||||||| || | || |||||| ||||| || || || | Sbjct 1363576 CATGGATTCCACATCCACGAGTTCGGTGACAACACCAACGGATGCACCTCGGCTGGACCG 1363635 Query 105147 CACTTCAACCC-TACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGG 105205 ||||||||||| ||| || | | ||||| | || || ||||| ||||| |||| ||| Sbjct 1363636 CACTTCAACCCGCACG-GCAAGGAGCACGGTGGCCCCGATGCCGCCGAAAGACACGCCGG 1363694 Query 105206 CGACCTGGGCAATGT 105220 ||| ||||||| || Sbjct 1363695 AGACTTGGGCAACGT 1363709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398853674743573