Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq4622 122 7e-23 seq986 114 1e-20 seq251 113 3e-20 seq100 111 1e-19 >seq4622 Length=411747 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||||||||| || || ||||| || || || ||||| || || | | |||||| | Sbjct 274377 CGCAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 274436 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| || | ||||| | |||||||| ||||| || ||||| ||| Sbjct 274437 TCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGCGGGATTCCCTCCTTG 274496 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| |||||| | || | || || || |||| || ||||| || || Sbjct 274497 TCCTGGATTTTGGCCTTGACATTCTCGATCGTATCGGACGGTTCGACCTCAAGGGTGATG 274556 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| ||||| || |||||||| Sbjct 274557 GTCTTGCCCGTCAGGGTCTTAACGAAGATCTGCAT 274591 >seq986 Length=4314454 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || || || ||||||||||| ||||| | | || ||| Sbjct 1409159 ACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGATAGAGTACGACC 1409100 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || ||||| || || | |||| | || ||||| || |||||||| || || Sbjct 1409099 ATCTTCTAGCTGTTTACCGGCGAAAATCAGACGCTGTTGATCTGGAGGAATACCTTCCTT 1409040 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || ||||| | || | ||||| ||| | || || || ||||| || Sbjct 1409039 GTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGGCTCGACCTCCAGAGTGAT 1408980 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| ||||| || || || |||||||| Sbjct 1408979 GGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 1408944 >seq251 Length=2698768 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | |||||| |||| ||| || ||| ||| || || || || || |||| Sbjct 664541 CCTCCACGAAGACGCAGAACCAGATGCAGAGTGCTTTCCTTCTGGATATTGTAGTCCGAC 664482 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || ||||| || ||| | ||||| | |||||||| || || Sbjct 664481 AGAGTGCGGCCATCCTCCAGCTGTTTACCGGCAAAGATCAAACGCTGCTGATCTGGAGGG 664422 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || || || || | || ||||| |||| | ||||||||| | || ||| Sbjct 664421 ATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATGGTGTCAGAAGGCTCAACT 664362 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || ||||| | || || || || |||||||| Sbjct 664361 TCAAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCAT 664315 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||| || |||| |||||| ||| ||| || || ||||| || || | | Sbjct 663629 CCTCCTCGCAGACGAAGAACCAGATGAAGAGTGCTTTCCTTCTGGATGTTGTAGTCGGAA 663570 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || || || || ||| | ||||| | |||||||| || || Sbjct 663569 AGAGTACGGCCATCTTCCAGCTGCTTACCGGCAAAGATCAAACGCTGCTGATCTGGAGGG 663510 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || || || || | || ||||| |||| | |||||||| | || ||| Sbjct 663509 ATACCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATGGTGTCAGATGGCTCGACT 663450 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||| || || || ||||| | || || || || ||||||||| Sbjct 663449 TCAAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 663402 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||| || |||| |||||| ||| ||| || || ||||| || || | | Sbjct 663173 CCTCCTCGCAGACGAAGAACCAGATGAAGAGTGCTTTCCTTCTGGATGTTGTAGTCGGAA 663114 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || || || || ||| | ||||| | ||||| || || ||| Sbjct 663113 AGAGTACGGCCATCTTCCAGCTGCTTACCGGCAAAGATCAAACGCTGCTGGTCTGGGGGA 663054 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || ||||| | || ||||| |||| | ||| || || | || ||| Sbjct 663053 ATGCCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTATCGGATGGCTCGACT 662994 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || ||||| | ||| || || || |||||||| Sbjct 662993 TCAAGAGTAATGGTCTTTCCAGTCAGGGTCTTGACGAAGATCTGCAT 662947 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | |||||| |||| |||||| || || || || ||||| ||||||| Sbjct 661805 CCTCCACGGAGACGCAGAACCAGATGAAGGGTACTCTCCTTCTGGATGTTGTAATCCGAC 661746 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || || || || || | ||||| | ||||||||||| || Sbjct 661745 AGGGTACGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCCGGGGGG 661686 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| || || || | || || ||| | || | ||||| || |||| || Sbjct 661685 ATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAGGGTTCGACC 661626 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | || || || || || |||| |||||| || || ||||||||| Sbjct 661625 TCCAAGGTGATGGTCTTACCGGTTAGGGTTTTGACGAAAATCTGCATT 661578 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | |||||| |||| |||||| ||| || || || || || || || | | Sbjct 662945 CCTCCACGGAGACGCAGAACCAGATGAAGAGTGCTCTCCTTCTGGATATTGTAGTCGGAA 662886 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || || || || || || | ||||| | |||||||| || || Sbjct 662885 AGAGTACGACCATCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 662826 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | || ||||| |||| | |||||||| | || ||| Sbjct 662825 ATTCCTTCCTTATCCTGGATCTTAGCCTTGACGTTTTCAATGGTGTCAGATGGCTCGACT 662766 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||| || || || ||||| | || || || || ||||||||| Sbjct 662765 TCAAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 662718 >seq100 Length=1779872 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||||||||| ||| || |||||||| || || ||||| || || | | |||||| Sbjct 1410469 ACGCAGCACCAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 1410410 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || || || | ||||| | |||||||| || ||||| || || || Sbjct 1410409 ATCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCCTT 1410350 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || ||| |||| | ||||| || | || || ||||| || || Sbjct 1410349 GTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGATGGCTCGACCTCAAGGGTGAT 1410290 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || | ||| || || || |||||||| || Sbjct 1410289 GGTCTTGCCCGTAAGGGTCTTGACGAAGATCTGCATCTT 1410251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385196866555737