Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq888 116 4e-21 >seq888 Length=58548 Score = 116 bits (128), Expect = 4e-21 Identities = 161/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 145889 GGAGAGAACAGAGTGATGTAATCGTCTTTAATCAGACGTTCAAACATCAGGT-CG-TTGA 145946 || |||||||| ||||||| | || || ||||| || | ||| ||| || |||| Sbjct 24104 GGCGAGAACAGCGTGATGTTCTGGTTCTTGATCAGGCGCTGGTACAG--GGTGCGATTGA 24161 Query 145947 TTTGAACACCGTAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTGA 146006 | || ||||| || ||||| || ||||| |||||||| || || || ||||||||||| Sbjct 24162 TCTGCACACCATAGTCCAAATGGCGAATGCGGTTTTCCTCCACACCGCGGTTGTTCTTGA 24221 Query 146007 GTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAATGTCGCCGCGCCAC 146066 | || || || ||| ||||||| |||||| | || ||| ||| || ||||| || | Sbjct 24222 GCACCAGCAGCGATTCCACTTCCAGGTGCCACAGGGGGTAGAACAGCGTGGCCGCCCCTC 24281 Query 146067 CGCGAACTCCACCTTGGGAGCAAGACTTAACTGCTGTTTGGA 146108 | || || || || || ||||| ||||| || || | |||| Sbjct 24282 CCCGCACACCGCCCTGCGAGCAGGACTTGACGGCAGCCTGGA 24323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554322236653920