Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq476 159 1e-34 >seq476 Length=182463 Score = 159 bits (176), Expect = 1e-34 Identities = 212/292 (73%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 30094 GATCTCTGTTGTGTAGCGGTCCTGACCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGA 30153 ||| || || ||||| |||||||| ||||||| |||||||||| || || | || || Sbjct 52939 GATTTCGGTGGTGTAACGGTCCTGGCCGTCCTTGTCCTGCCACTTGCGGGTGCGCAGGGA 52880 Query 30154 ACCCTCGACGTACAGTTG-CTGACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACT 30212 || || || |||| || ||| ||||| | || ||| ||| ||||||| || | || Sbjct 52879 GCCTTCCACATACACCTGGCTG-CCCTTGCGCAGGTACTGGCCGGCGATCTCGGCGAGCT 52821 Query 30213 TCCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGT 30272 | |||||||||||||||||||||||||||||| ||| | | | |||||| ||||| Sbjct 52820 TGCCGAAGAACACCACGCGGTGCCATTCGGTGGCCTCGCGCTTTTCGCCGGTGGCCTTGT 52761 Query 30273 CCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATAT 30332 | |||| | ||| ||||||| || ||||||||| | ||| | |||| | || | Sbjct 52760 CGCGCCAGTTGTCGGTGGTGGCCAGCGTGATGTTGCAGATCGCGTCGCCGCTCGGGGCGT 52701 Query 30333 AGCGAGTTTCCGGGTCACCACCGACGTTGCCAACCAGAATGACTTTGTTAAC 30384 |||| ||||| ||||| || | ||||| | ||||| || ||||| || Sbjct 52700 AGCGGGTTTCGGGGTCCTTGCCCAGATTGCCGATAAGAATCACCTTGTTGAC 52649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145630172977808