Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq986 114 1e-20 seq4284 102 8e-17 >seq986 Length=4314454 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || | ||||| ||||||||||| || |||||||||||| | Sbjct 1408030 CCACCACGCAGACGAAGGACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAATCGGAC 1407971 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | || ||||| || ||||| ||| |||||||||| |||||||| || || Sbjct 1407970 AAAGTACGACCATCCTCGAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCTGGTGGG 1407911 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||| ||||| ||| || || | | || | ||||| | || || || Sbjct 1407910 ATGCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGGTGTCCGAAGGCTCGACC 1407851 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | |||||||| ||||| || || ||||| || |||||| Sbjct 1407850 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATA 1407803 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||||| ||| | ||||| ||||||||||| || |||||||| || | Sbjct 1408258 CCACCACGCAGACGCAGAACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAGTCTGAC 1408199 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||| ||||| || |||||||| ||||||||||||| ||||| ||||| Sbjct 1408198 AGAGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGTTGTTGATCTGGAGGG 1408139 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||||| || | | ||| | ||||| | || || || Sbjct 1408138 ATACCTTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCGACC 1408079 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | |||||||| |||| || || || || || |||||| Sbjct 1408078 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATA 1408031 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||||| ||| | ||||| ||||||||||| || |||||||| || | Sbjct 1408714 CCACCACGCAGACGCAGAACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAGTCTGAC 1408655 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | || ||||| || ||||| ||| |||||||||| |||||||| || || Sbjct 1408654 AGAGTACGACCATCCTCGAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCTGGTGGG 1408595 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||| ||||| || || || | | || | ||||| | || || || Sbjct 1408594 ATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCGATGGTGTCCGAAGGCTCGACC 1408535 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | |||||||| ||||| || || ||||| || |||||| Sbjct 1408534 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATA 1408487 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||||| ||| | ||| | |||||||| || || |||||||| || | Sbjct 1407802 CCACCACGCAGACGCAGAACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 1407743 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||| ||||| || |||||||| | ||||||||||| ||||| ||||| Sbjct 1407742 AGAGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAAATCAGACGTTGTTGATCTGGAGGG 1407683 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||||| || | | ||| | ||||| | || || || Sbjct 1407682 ATACCTTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCGATGGTGTCCGAAGGCTCGACC 1407623 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | |||||||| |||| || || ||||| || |||||| Sbjct 1407622 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATA 1407575 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||||| ||| | ||| | |||||||| || || |||||||| || | Sbjct 1408486 CCACCACGCAGACGCAGAACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 1408427 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||| ||||| ||||||||||| ||||||||||||| ||||| ||||| Sbjct 1408426 AGAGTACGGCCGTCCTCGAGCTGTTTACCAGCGAAGATCAGACGTTGTTGATCTGGAGGG 1408367 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| || || ||| | | || | ||||||| || || || Sbjct 1408366 ATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCTGAAGGCTCGACC 1408307 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | ||||| || || | || || || || || |||||| Sbjct 1408306 TCCAAAGTGATGGTCTTACCAGTAAGAGTCTTCACAAAAATCTGCATA 1408259 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||||| ||| | ||| | |||||||| || || |||||||| || | Sbjct 1408942 CCACCACGCAGACGCAGAACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 1408883 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||| ||||| ||||||||||| ||||||||||||| ||||| ||||| Sbjct 1408882 AGAGTACGGCCGTCCTCGAGCTGTTTACCAGCGAAGATCAGACGTTGTTGATCTGGAGGG 1408823 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| || || ||| | | || | ||||||| || || || Sbjct 1408822 ATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCTGAAGGCTCGACC 1408763 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | ||||| || || | || || || || || |||||| Sbjct 1408762 TCCAAAGTGATGGTCTTACCAGTAAGAGTCTTCACAAAAATCTGCATA 1408715 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || |||| ||| | || || |||| ||||| || ||||| |||||||||||| Sbjct 1409170 CCACCGCGTAGACGAAGGACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCG--G 1409113 Query 137245 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 || | | ||| ||||| || |||||||| || | |||||||| || ||||| |||| Sbjct 1409112 ATAGAGTACGACCATCTTCTAGCTGTTTACCGGCGAAAATCAGACGCTGTTGATCTGGAG 1409053 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||| ||||| || || || | | || | ||||| | || || | Sbjct 1409052 GAATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAAGGCTCGA 1408993 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 | || | ||| | |||||||| ||||| || || ||||| || |||||| Sbjct 1408992 CCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATA 1408943 >seq4284 Length=891408 Score = 102 bits (112), Expect = 8e-17 Identities = 172/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 50197 TCAACGCTTTCGATAATATTCCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGA 50256 ||||||| |||||||| | || |||||| || || | || ||||||||||| |||| Sbjct 85128 TCAACGCCATCGATAATCTGCCCTGTGTGAAGAAGAAAGCTGACTGGGCATTGAACTGGA 85187 Query 50257 CTaaaaacaaaaa-aCTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGT 50315 | || |||||| | |||| || ||||| | || || || ||| || |||||| Sbjct 85188 TTTCAAGCAAAAAGGCCAACTTCGG-AGAACGCGTCGTAGCCTTCGCCGCCGTGGAAGGT 85246 Query 50316 GTGtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAA-AACCTTAGGCATAATGCC 50374 | || ||| || || || ||| |||| |||| | || || | | || | ||||| Sbjct 85247 ATTTTCTTTAGTGGAAGTTTCGCATCCATCTTTTGGTTGAAGAAGCGT-GGACTGATGCC 85305 Query 50375 CGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGC 50434 || || || || |||||| ||||| || || |||||||| ||||||| |||||||| Sbjct 85306 TGGGCTAACATTCTCCAACGAATTGATCTCACGTGACGAAGGCCTGCACACGGACTTTGC 85365 Query 50435 GTGT 50438 ||| Sbjct 85366 TTGT 85369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488514949952400