Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq888 129 8e-25 seq1942 95.1 2e-14 >seq888 Length=58548 Score = 129 bits (142), Expect = 8e-25 Identities = 273/404 (68%), Gaps = 4/404 (1%) Strand=Plus/Plus Query 32814 ATTGATTTGGATACCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTTGTTGTT 32873 |||||| || | ||| |||||||| || | || || ||||| |||||||| |||||| Sbjct 24157 ATTGATCTGCACACCATAGTCCAAATGGCGAATGCGGTTTTCCTCCACACCGCGGTTGTT 24216 Query 32874 CTTGAGCACAAGGATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAGCAGC 32933 ||||||||| || | ||| ||||| || ||||||| || || |||| || || || Sbjct 24217 CTTGAGCACCAGCAGCGATTCCACTTCCAGGTGCCACAGGGGGTAGAACAGCGTGGCCGC 24276 Query 32934 GCCACCACGTACACCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCCAGAA 32993 || || || ||||||||||| |||||| || || |||| ||| || || |||| Sbjct 24277 CCCTCCCCGCACACCGCCCTGCGAGCAGGACTTGACGGCAGCCTGGAACATCTTGAAGAA 24336 Query 32994 TGGGATAATACCAGTATGACGAACCTCGCCAGAACGAATTCTAGAGCCTTCAGCACGAAT 33053 || | || || || | | ||||| || ||| ||| | ||||| || Sbjct 24337 GGGCAGGCAGCCCGTGTGCTGCGCTTCGCCGCCCCGGATTTCGCTGCCCACGGCACGGAT 24396 Query 33054 AGCACCACCATTGATACCGATACCAGCTCTCTTGCTGATA--TAGTCAACGATAGAACTA 33111 | || |||||||| ||||| ||||| | | ||| || | || | ||||| | || Sbjct 24397 ACGGCCGCCATTGATGCCGATGCCAGCGCGC-TGC-GACACGTACTTGACGATGGCGCTG 24454 Query 33112 GCGGTTGCGTTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCTAAAC 33171 | ||| ||||| |||| ||| || || | | ||| ||| ||||| ||||| ||| Sbjct 24455 GTGGTGGCGTTGATGCCATCCAGGCTGTCGTCGCATTCGATCAGCACGCACGAGCTGAAC 24514 Query 33172 TGACGGGTCGGAGTACGAACACCAGCCAGAATAGGAGTCGGAAG 33215 || || | || || || || || | || ||| || || || || Sbjct 24515 TGGCGCATGGGCGTGCGCACGCCGGACATAATGGGGGTAGGCAG 24558 >seq1942 Length=9465 Score = 95.1 bits (104), Expect = 2e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 97407 CATGGGCAGGATTGAACTGCCGACCCCACCCTTATCAGGGGTGTGCTCTACCACTGAGCT 97466 ||||||||||||||||||||||||| | |||||| || ||| |||||||||||||||||| Sbjct 8169 CATGGGCAGGATTGAACTGCCGACCTCTCCCTTACCAAGGGAGTGCTCTACCACTGAGCT 8228 Query 97467 ACATG 97471 ||||| Sbjct 8229 ACATG 8233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710248964309520