Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq888 242 4e-59 >seq888 Length=58548 Score = 242 bits (268), Expect = 4e-59 Identities = 284/382 (74%), Gaps = 4/382 (1%) Strand=Plus/Plus Query 121982 CATGATGTCGTCAAAGACGATCGACGGGTCTGCCAGGATGTTGCGGATGATGTGGGTGTA 122041 || ||||||||| || || | || ||||| | |||||||||||||||||||||||| Sbjct 22459 CACGATGTCGTCGAACACAACAGAGGGGTCGTTGACGATGTTGCGGATGATGTGGGTGTA 22518 Query 122042 CGAACGAGAGTGAATAGTCTCACTGAACGCCCAAGTCTCCACCCAAGTTTCCAGGGTGGT 122101 ||| || ||||| || || || |||||||| ||||| | ||| || ||||| || Sbjct 22519 CGAGCGCGAGTGGATCGTTTCGGAAAACGCCCAGGTCTCGATCCACGTCTCCAGCTCGGG 22578 Query 122102 GTCGGATACGATCGGCAGAAGAACTGC--GTTCGGGCCACGGCCCTGTACAGAGTCCAGA 122159 || || | |||||| |||| | ||| || | || ||||| | |||||||| Sbjct 22579 CAGCGACACCAGCGGCAG--GAACGCCATGTTGGGACTGCGCCCCTGGATGGAGTCCAGC 22636 Query 122160 AGGATCTGATACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGAAGATTCATG 122219 || |||| || |||||||||||||||||||||||||||||||| ||||| || ||| | Sbjct 22637 AGCGTCTGGTATTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGGTCCGGCAGGTTCTGG 22696 Query 122220 TAGTCAATTCGGTCACGGGTCACGTTCACCTCTTCCGGACGCCAGAAGAATGCCAGTTGC 122279 || || | ||||| | || | || || |||||||| ||||||||||| | || ||| Sbjct 22697 TAATCGAGCCGGTCCTGCGTGATGTCTACTTCTTCCGGGCGCCAGAAGAAGGAGAGCTGC 22756 Query 122280 TTTTCGATCAGCTTTTCGAACTTAGCGTGTTTTTGCTGGTCATAACGAGAAACGTTCGGC 122339 |||||||||||||| ||||| | | || || |||||||| || || | |||||| | Sbjct 22757 TTTTCGATCAGCTTCTCGAAGATGGGGTACTTCTGCTGGTCGTAGCGTGCCACGTTCACC 22816 Query 122340 GTCTCACCGAGGAACATCGGCT 122361 | || |||| |||||| |||| Sbjct 22817 GGCTGGCCGAAGAACATGGGCT 22838 Score = 141 bits (156), Expect = 9e-29 Identities = 717/1111 (65%), Gaps = 65/1111 (6%) Strand=Plus/Plus Query 123352 GCCGAGGTTGATTGCAGACAGCGTACAAAGTGCAATCTCGCCATCGTCCTCAGGATTTTT 123411 ||| ||||||| || |||||||| || || || |||||||| | || ||| || Sbjct 23767 GCCCAGGTTGAAGGCCGACAGCGTGCACAGCGCGATCTCGCCGTTTTCATCA------TT 23820 Query 123412 GAGGTCATTGATCGCGTGAGTAGGCAGGGCAATCTCCATGCACAGGTTGGACTGTTTCAC 123471 || || || | || | || ||||| ||||||||||||||||||||||| ||| Sbjct 23821 GATATCGTTCAGCGGCTTGGTGGGCAGCAGGATCTCCATGCACAGGTTGGACTGGCGCAC 23880 Query 123472 CGGGGCCAGTTCT--GGATTGAACGGGCTGTTGGTGTTGCAGTGGTCAACGTGCTGAATG 123529 || ||| |||| | | ||||||||||| |||||||||||||| |||| ||| ||| Sbjct 23881 GGGTGCC--TTCTGCGCGTCGAACGGGCTGTGCGTGTTGCAGTGGTCCACGTTCTGGATG 23938 Query 123530 TAGATGCGTCCTGT-CTGACTGCGCTCCTGCATAGCCACGGAGAAGGCTTCTGCTGCGGA 123588 |||||||| || || ||| | |||||||||||| || ||||| ||| | || | Sbjct 23939 TAGATGCGGCCGGTGCTGGC-GCGCTCCTGCATCATCAGCGAGAACAGTTCCACGGCCGG 23997 Query 123589 GATGCTTTTCTTAGCCACT-TCCGGATCGGCTTCCAACTTCTCGTACAACTCTTCAAATT 123647 ||| | ||| || | | | ||| || ||| ||||| | || || | Sbjct 23998 CATGGTGCGCTT-GCGAATGGAAGCATCCTGCTCGTACTGTTCGTAGAGGCGCTCGAACT 24056 Query 123648 TCTTCTGGTCGGAGAAGAAATACTCGTACAGCTTGCCACCTGCAACGTTCGGGTGGAACA 123707 |||||||||| |||||| |||||||| ||| || ||| ||| ||||| Sbjct 24057 CGTTCTGGTCGGCGAAGAACGCGTCGTACAG---GCCGGGCACATCGTGCGGCGAGAACA 24113 Query 123708 GAGTGATATT-TCGCCCATGTTGCAGACGTGCATACAGCATTTTGTTGATTTGCAGGCCG 123766 | ||||| || | | | || | ||| || ||||| | ||||| |||| || Sbjct 24114 GCGTGATGTTCTGGTTCTTGAT-CAGGCGCTGGTACAGGGTGCGATTGATCTGCACACCA 24172 Query 123767 TAGTCAACGTGACGAGCACGGGTGCTCTCTGTGCCACGGTTGTTCTTCATCACGATCAGG 123826 ||||| | || ||| ||| | ||| || ||||||||||| | ||| | ||| Sbjct 24173 TAGTCCAAATGGCGAATGCGGTTTTCCTCCACACCGCGGTTGTTCTTGAGCACCAGCAGC 24232 Query 123827 TTTTCGAAATCCCAGTGCCACATAGGGTAGAAGTAAGTTGCCGAAGCCTTACGTACACCA 123886 ||| | ||| |||||||| |||||||| || |||| | || ||||| Sbjct 24233 GATTCCACTTCCAGGTGCCACAGGGGGTAGAACAGCGTGGCCGCCCCTCCCCGCACACCG 24292 Query 123887 CCCTGAGA--------TGTC--CACCCCAGACCTTCTTGGTAAGAACGGACGATCGGCAC 123936 ||||| || || | || || || | ||||| ||||| || |||| Sbjct 24293 CCCTGCGAGCAGGACTTGACGGCAGCCTGGAACATCTTG--AAGAAGGG----CAGGCA- 24345 Query 123937 AGTTCCTGCGTGTTTCACCTCTCCGCCACGGATT--GGTGCGTCCTGACCACGAATCATG 123994 || | ||| | | | || ||||| |||||| | ||| || |||| || | Sbjct 24346 ---GCCCGTGTGCTGCGCTTCGCCGCCCCGGATTTCGCTGC--CCACGGCACGGATACGG 24400 Query 123995 CCAAAGTTAAGGCCGATCCCTGCTCGCTGGGCAGCGTA-TTTAC-CTTGCGCCGTCAGT- 124051 || || | |||||| || || ||||| | |||| || || | |||| | || Sbjct 24401 CCGCCATTGATGCCGATGCCAGCGCGCTGCGACACGTACTTGACGATGGCGCTGGTGGTG 24460 Query 124052 GCGTTGAAG--ATCTGGTCGATATCATCGCCGGACTCGATCAATACGCAAGAACTGAACT 124109 ||||||| | ||| | | | || |||| | ||||||| ||||| || ||||||| Sbjct 24461 GCGTTGATGCCATCCAG--GCTGTCGTCGC---ATTCGATCAGCACGCACGAGCTGAACT 24515 Query 124110 GTCGTGTCGGAGTACGAACACCCGCCATGATCGGTGTCGGCAGAGACACCTTCATCAGGG 124169 | || | || || || || || | ||| || || || ||||| || | ||| | | | Sbjct 24516 GGCGCATGGGCGTGCGCACGCCGGACATAATGGGGGTAGGCAGCGAAATCTTGAAGCGCG 24575 Query 124170 ACACGTTCTCGTACA---GATCAACGATACGCTCCAGAC-GAGTGGCCTTGTCCTCCTTG 124225 | ||| ||||| | | | || ||| ||||| | | || | || | |||| Sbjct 24576 AAACGGCTTCGTAGAAGCGCTTGAC-ATA--GTCCAGGCGGCGTTCCGCTG-GGTACTTG 24631 Query 124226 GACAGAAGGCCCATTGCAATCAGCA-TCAGCGCCATCTGTGGAGATTCGTAAATCTCGC- 124283 | | |||| ||| || | ||||| || | |||||| || ||||| || ||| Sbjct 24632 GCGAACAGGCACATGGCCACCAGCACGTAGAG-CATCTGCGGGCTCTCGTAGAT-GCGCT 24689 Query 124284 CAGAGACACGGTTCTTGACCAGATACTTGTCTTCGTACTGACGCATCGCTGCATAAGTGT 124343 | || ||||||| ||||| |||||| ||||| ||| | ||| || |||| | Sbjct 24690 TTGTCACCCGGTTCTGCACCAGGTACTTGCCTTCGAGCTGTTTGACCGCGGCGTAAGAGA 24749 Query 124344 AGTCGAAGTCACGATCGTGTACGATCTTGCCGTCGAGGAAGTCGATTTCGTCACGGCTGT 124403 |||| | ||| || ||| ||| | ||| || ||||| ||| || ||||||| Sbjct 24750 AGTCCATGTCGCGCCAGTGATCGACGAAGGCGTTGATCTGGTCGAATTCTTCGCGGCTGT 24809 Query 124404 AGTCTTCCAGCAGGTGACGGTCATACTTCCC 124434 |||| |||||||||| |||| ||||| || Sbjct 24810 AGTCGGCCAGCAGGTGCGGGTCGTACTTGCC 24840 Score = 86.0 bits (94), Expect = 6e-12 Identities = 286/440 (65%), Gaps = 10/440 (2%) Strand=Plus/Plus Query 121426 TGTTGATCCACGGAATCGGGTT---CTTGGTCGGCTTGCCGATCAGTTCACCCAGACCAA 121482 |||||||||||||||||||||| |||| | ||| ||| | ||| || | Sbjct 21870 TGTTGATCCACGGAATCGGGTTGTTCTTGATGCGCT---CGAACGCGGGCTTCAGCCCCA 21926 Query 121483 CTGCTCGCATACGCAGGTCTGTGATGTAGTCGATGTATCCGTCCAGCATCCCCTTGTTCA 121542 | || ||| || | | |||||||| |||| ||| | ||| || ||||||||| Sbjct 21927 CGGCGGTCATGCGGATATTGGTGATGTACTCGACGTACTGGCTCAGGATGTCCTTGTTCA 21986 Query 121543 GACCGATCATGGAACCATCTTTGAACAGGAAGCTGCCCCAATCCTTCTCCTGCACAGAGG 121602 | ||||||||||| ||||| ||||| || |||| | ||| ||||||| | | Sbjct 21987 GGCCGATCATGGAGCCATCGCGGAACAAATAGTCCGCCCACTGCTTTTCCTGCAGCGCCG 22046 Query 121603 CGTCGATAAAGCCCTGTCGT-GCT-TCCTCGTAGCAGTCCTCCGCAACACGAGCAAACAG 121660 ||| | || | | || || || | | ||| |||| ||| | | || ||| Sbjct 22047 CGTTCTTGAA--CATCGCGAAGCACTCGTGCTCGCACTCCTGCGCGATGAGGGCGAACTC 22104 Query 121661 GTCCCCTTCGTTACCATTTTGCATTTCTCTCAGCATATACTGAGTTCCTGACAAATGCAA 121720 | | || | || |||| |||||| | ||| || || | | |||| Sbjct 22105 GGGGTCGTCCTGCCCGGAACGCATGATATTCAGCAAGTGCTGCGTACCGGTAAGGTGCAG 22164 Query 121721 GGCTTCATCACGAGCAATTAACTCGATGATGTTGGTATTGCCCAGCATAACCCCACGCTC 121780 || || ||||| || || | |||||| |||| ||||| ||| | | ||||| Sbjct 22165 CGCCTCGTCACGCGCGATGAGGCGGATGATCTTGGCGTTGCCTTCCATGAGCTTGCGCTC 22224 Query 121781 ACCGAAAGCGAAGGAGCAGGCAAAGCTCACGTAGAAGCGGATAGCTTCGAGTGCGTTGAT 121840 |||| ||||| ||||| || |||||||||||||||||||| || || || ||| | Sbjct 22225 GGCGAAGGCGAACGAGCACGCGAAGCTCACGTAGAAGCGGATCGCCTCAAGGATGTTCAC 22284 Query 121841 ATTGTGCAGGCACAGGTACA 121860 || |||||||||||||| Sbjct 22285 GTTCATCAGGCACAGGTACA 22304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 485999899512480