Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_024121.1 Length=167266 Score E Sequences producing significant alignments: (Bits) Value seq888 154 2e-32 >seq888 Length=58548 Score = 154 bits (170), Expect = 2e-32 Identities = 280/407 (69%), Gaps = 2/407 (0%) Strand=Plus/Plus Query 139719 TTGATTTGCACACCGTAATCCAAGTGACGAATGCGGTTCTCTTCAACGCCTTTGTTGTTT 139778 ||||| |||||||| || ||||| || ||||||||||| || || || || |||||| Sbjct 24158 TTGATCTGCACACCATAGTCCAAATGGCGAATGCGGTTTTCCTCCACACCGCGGTTGTTC 24217 Query 139779 TTCAGAACAAGCAAGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAACGTCGCTGCA 139838 || || || |||| ||| ||||||| |||||| | || ||| ||| ||| || || Sbjct 24218 TTGAGCACCAGCAGCGATTCCACTTCCAGGTGCCACAGGGGGTAGAACAGCGTGGCCGCC 24277 Query 139839 CCACCACGAACACCACCTTGAGAACAGGATTTAACCGCAGTCTGGAAGTGTTTCCAGAAA 139898 || || || ||||| || || || ||||| || || |||| |||||| || |||| Sbjct 24278 CCTCCCCGCACACCGCCCTGCGAGCAGGACTTGACGGCAGCCTGGAACATCTTGAAGAAG 24337 Query 139899 GGAATTACGCCAGTGTGTTTGACTTCACCGAAACCAATTTTTGAGCCTTCAGCTCGGATT 139958 || | ||| ||||| | |||| ||| | |||| ||| | || ||||| Sbjct 24338 GGCAGGCAGCCCGTGTGCTGCGCTTCGCCGCCCCGGATTTCGCTGCCCACGGCACGGATA 24397 Query 139959 CGACCTGCGTTGATGCCGATTCCAGCTCGTTTAGAAATGTACTTGACAATCGATGCTGCT 140018 || || | ||||||||||| ||||| || | || | ||||||||| || | |||| | Sbjct 24398 CGGCCGCCATTGATGCCGATGCCAGCGCGCTGCGACACGTACTTGACGAT-GGCGCTGGT 24456 Query 140019 -GAGTCGTTGATACTGTTAAGCGAATCATCAGACTCGATAACAACACACGAACTGAATTG 140077 | | ||||||| | | || || || | ||||| | || ||||| ||||| || Sbjct 24457 GGTGGCGTTGATGCCATCCAGGCTGTCGTCGCATTCGATCAGCACGCACGAGCTGAACTG 24516 Query 140078 ACGAATCGGTGTACGGGCTCCTGCCATAATAGGAGTTGGCAATGAAA 140124 || || || || || | || | |||||| || || |||| |||| Sbjct 24517 GCGCATGGGCGTGCGCACGCCGGACATAATGGGGGTAGGCAGCGAAA 24563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535091380236720