Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq888 255 6e-63 seq4721 91.5 1e-13 >seq888 Length=58548 Score = 255 bits (282), Expect = 6e-63 Identities = 289/383 (75%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 118886 CATGATGTCATCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTA 118945 || |||||| || || || | || || || | |||||| |||||||| |||||||| Sbjct 22459 CACGATGTCGTCGAACACAACAGAGGGGTCGTTGACGATGTTGCGGATGATGTGGGTGTA 22518 Query 118946 TGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGT 119005 ||||| |||||||| || || |||||||| ||||| | ||| || ||||| | | Sbjct 22519 CGAGCGCGAGTGGATCGTTTCGGAAAACGCCCAGGTCTCGATCCACGTCTCCAGC-TCGG 22577 Query 119006 GTCG-GACACGATCGGGAGCAGAACTGC--GTTCGGCCCACGGCCCTGTACAGAATCCAG 119062 | | ||||| | ||| || |||| | ||| || | || ||||| | || ||||| Sbjct 22578 GCAGCGACACCAGCGGCAG--GAACGCCATGTTGGGACTGCGCCCCTGGATGGAGTCCAG 22635 Query 119063 AAGGATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCAT 119122 || ||||||| |||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 22636 CAGCGTCTGGTATTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGGTCCGGCAGGTTCTG 22695 Query 119123 GTAGTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTG 119182 ||| |||| ||||| | || | || ||||||||||| ||||||||||| | || || Sbjct 22696 GTAATCGAGCCGGTCCTGCGTGATGTCTACTTCTTCCGGGCGCCAGAAGAAGGAGAGCTG 22755 Query 119183 CTTCTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGG 119242 ||| ||||||||||||||||| ||| || ||||||||||| ||||| | |||||| Sbjct 22756 CTTTTCGATCAGCTTCTCGAAGATGGGGTACTTCTGCTGGTCGTAGCGTGCCACGTTCAC 22815 Query 119243 TGTCTCGCCGAGGAACATCGGCT 119265 | || ||||| |||||| |||| Sbjct 22816 CGGCTGGCCGAAGAACATGGGCT 22838 Score = 118 bits (130), Expect = 1e-21 Identities = 489/755 (65%), Gaps = 56/755 (7%) Strand=Plus/Plus Query 119909 CTTGAAGGAAATCGCATCACGAGGTGGCTCAAAACCGTTCGTGGAGTTGGTAATCTGACT 119968 ||||| || | | || | || || ||||| | ||||| |||| |||| ||||| || Sbjct 23243 CTTGACAGACACCACACCGCGGGGAGGCTCGATGCCGTTGGTGGCATTGGCGATCTGGCT 23302 Query 119969 GGACGTCTCGCAAGGCATCATCGTGGACAGCGTAGAGTTACGCAGTCCATGAATAGCGAT 120028 ||||| || | ||||| | || || || ||| ||||| |||| || || ||| Sbjct 23303 CGACGTTTCCGAGGGCATGAGCGCGGTCAACGTGGAGTTGCGCAAGCCGTGGGCCTGGAT 23362 Query 120029 GTCGATACGCAGCTTTTCCCAATCCATCTTCAG---TTC--CGCAG----TGTGGAGGCC 120079 |||| |||||| |||||| || | || ||| ||| ||||| ||| |||| | Sbjct 23363 GTCGGCGCGCAGCGCTTCCCAGTCGAGCTGCAGGGCTTCGGCGCAGACGGTGTCGAGGTC 23422 Query 120080 ATCTACCTCTTTCTTGTAACGGTCGATCGGCAGAATGCCCTGAGAGTAAGTGGTCTCGTG 120139 |||||||||| |||||||||||| ||||| | || ||||| |||| Sbjct 23423 --------CTTTCTTGTACGTGTCGATCGGCAGCATGCCGGCGGCATA-GTGGTTTCGTC 23473 Query 120140 GAAGAGATCACATTTACCCAATTCTTTTGCCAGGTCAACCGACGCTTCCAGTAGGTAATA 120199 ||| || | | || || | | || | || ||||||| || | ||| || Sbjct 23474 GAATGCTTCGTAAGGTCTGAACTCGTGCGAGAGCTGCACTGACGCTTTGAGCATGTAGTA 23533 Query 120200 CTGGAATGCTTC--AGCCAGTT--CGTGAA-CAGCGTTCGCTGCACG--AGGGTC---GC 120249 ||| | ||||| || || ||| | | | || |||||| || || || || Sbjct 23534 CTG-ATCGCTTCGAAGGTGGTGTGCGTCAGGCCGAGTGCGCTGC-CGTCAGAGTAACGGC 23591 Query 120250 TGTATTTCAGGCCACGCTTCGCCAGGTAGTATGCTAAGTTGGTCCAGCCAATACCCAGAG 120309 ||| ||| || ||||||||||| || ||||| | ||| | ||||| | Sbjct 23592 TGTTGTTC---------TTGGCCAGGTAGTAGGCGTAGTTGATGACGCCCACGCCCAGCG 23642 Query 120310 TACGTCGCAGTTTAGTCTTCTCT---GCCGCCAGAACCGGATAGTTCTGATAATCTAACA 120366 || ||| | || | | || ||| || || |||| ||| || || | || Sbjct 23643 AGCGGCGCTTGTCGGTGGCCACGCGCGCAGCCTTGACGGGGTAGTCCTGGTAGTCGAGCA 23702 Query 120367 GACGATCCAATGCACGAAC---CAGTGTACGGACAGGCTCACGCATGTCTTCCAGCTTCT 120423 | ||| | ||||| || ||| || |||||||| | | || || || ||| | Sbjct 23703 GGGCATCGAGCGCACGCACGATCAG-GT-CGGACAGGTTTTC-CAGCTCATCGAGCGATT 23759 Query 120424 CCACCTTGCCGAGGTTGATGGCAGACAGAGTACACAGGGCCACTTCCCCCGGGTCGTTCG 120483 ||| | ||| ||||||| ||| ||||| || ||||| || | || || ||| Sbjct 23760 CCAGCGCGCCCAGGTTGAAGGCCGACAGCGTGCACAGCGCGATCTCGCC------GTTTT 23813 Query 120484 GGTCATTAATGTCCGTAATCGGATGTGTCGGCAGGGCGATTTCCATGCACAGGTTGGACT 120543 ||||| || || | | ||| | || ||||| ||| ||||||||||||||||||| Sbjct 23814 CATCATTGATATCGTTCAGCGGCTTGGTGGGCAGCAGGATCTCCATGCACAGGTTGGACT 23873 Query 120544 GTTTCACCGGGGCCTGTTCGGGGTCGAACGGGCTATTAGTGTTGCAGTGGTCAACGTGCT 120603 | ||| || |||| | | |||||||||||| | |||||||||||||| |||| || Sbjct 23874 GGCGCACGGGTGCCTTCTGCGCGTCGAACGGGCTGTGCGTGTTGCAGTGGTCCACGTTCT 23933 Query 120604 GCACGTAAATACGGCCTGT-CTGAGAACGCTCCTG 120637 | | ||| || ||||| || ||| | |||||||| Sbjct 23934 GGATGTAGATGCGGCCGGTGCTG-GCGCGCTCCTG 23967 >seq4721 Length=367317 Score = 91.5 bits (100), Expect = 1e-13 Identities = 200/297 (67%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 111914 GCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCTGGG 111973 ||||| || || ||||| | ||| |||||||| | || ||||||| ||||| ||| Sbjct 17025 GCGATGGCGTTGATGGTGAGGTCGCGGCGGGCGAGGTCTTCTTCGAGCGTCACCGACGGG 17084 Query 111974 CTGAACATCACCTCGAAATCGTGGTATCCTGCGCCAGTTGAACGCTCGGTACGGGCCAGG 112033 | | | |||| || ||| || | | || ||||||||||||||||| Sbjct 17085 TCGGTGTGGAACACGAAGCCGGCGTAGCCCGGCGCGGTCTTGCGCTCGGTACGGGCCAGC 17144 Query 112034 GCGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAATGCGGCACCGACTTGCTCG 112093 ||||| || || | ||| || || ||| | || ||||| | ||||| ||| | Sbjct 17145 GCGTATTCCTCGTGGGTGCGCGGGTGGAGGAAGACCGGGAAATCCTTGCCGACCGGCTTG 17204 Query 112094 AAGCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACGGTCTTTG 112153 |||| || | | | |||| |||||| |||||| || || |||| ||||| ||| Sbjct 17205 TAGCCTTCGGCGAGGAGGTTTTCGGGGGTGGCGCCGACGACCACCCAGTCCCGGTCCTTG 17264 Query 112154 CTCTCAACACCCATCAGTTCATCGCGGACCGCGCCGCCGAC-CAGATAGATTTTCAT 112209 | | ||| | |||||| ||||||| ||||| ||||| ||| ||||||| ||| Sbjct 17265 ACCGGCAGACCGAGCAGTTCGTCGCGGATGGCGCCACCGACGCAG-TAGATTTCCAT 17320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477162025065840