Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_025414.1 Length=178171 Score E Sequences producing significant alignments: (Bits) Value seq888 129 7e-25 >seq888 Length=58548 Score = 129 bits (142), Expect = 7e-25 Identities = 348/526 (66%), Gaps = 10/526 (2%) Strand=Plus/Minus Query 41168 AAGCTGTCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCC 41227 ||| | ||| | ||||| || |||||| | || ||||| || || | ||| ||||| | Sbjct 24567 AAGATTTCGCTGCCTACCCCCATTATGTCCGGCGTGCGCACGCCCATGCGCCAGTTCAGC 24508 Query 41228 AGTTGCGTAGTGATTGAATCAGGTGATTCCCTGGGTTCTCTGAATGCTGTAACCTCTGCG 41287 ||||| |||| |||| | || ||||| | | || || ||| || Sbjct 24507 TCGTGCGTGCTGATCGAATGCGACGACAGCCTGGATGGCATCAACGCCACCACCAGCGCC 24448 Query 41288 ATCGTGAAGTATATTTCACAACGTGCTGGTATCGGTGTTAATGCTGGACACATTCGCGCA 41347 ||||| ||||| | || || || ||||| ||||| | |||| || | || || || Sbjct 24447 ATCGTCAAGTACGTGTCGCAGCGCGCTGGCATCGGCATCAATGGCGGCCGTATCCGTGCC 24388 Query 41348 ATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAA 41407 |||| ||||||| || || ||||| || || ||| | || |||| || Sbjct 24387 GTGGGCAGCGAAATCCGGGGCGGCGAAGCGCAGCACACGGGCTGCCTGCCCTTCTTCAAG 24328 Query 41408 CATATTC-AGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAAC 41466 || ||| || | || || || ||||| || || || || || || || || || || || Sbjct 24327 -ATGTTCCAGGCTGCCGTCAAGTCCTGCTCGCAGGGCGGTGTGCGGGGAGGGGCGGCCAC 24269 Query 41467 GTTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAA 41526 | ||| || || | ||||| ||||||| ||| |||||||| || || |||||| Sbjct 24268 GCTGTTCTACCCCCTGTGGCACCTGGAAGTGGAATCGCTGCTGGTGCTCAAGAACAACCG 24209 Query 41527 AGGTGTTGAGAATAACCGCATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGAT 41586 ||||| ||| | ||||||||||| || |||| ||||| || ||| | || | Sbjct 24208 CGGTGTGGAGGAAAACCGCATTCGCCATTTGGACTATGGTGTGCAGATCAATCGCACCCT 24149 Query 41587 GTATAAGCGTTTAATCAATAACGATTACATCACACTGTTCAGCCCTGACGTTGCAAATGA 41646 ||| |||| | ||||| ||| | ||||||| |||||| || ||| || || Sbjct 24148 GTACCAGCGCCTGATCAAGAACCAGAACATCACGCTGTTCTCGCCGCACGATG----TGC 24093 Query 41647 TC-GCCTGTATGATGCTTTCTATCAAGCTGATCAGACTGAGTTCGA 41691 | ||||||| || || |||| || || || |||| |||||||| Sbjct 24092 CCGGCCTGTACGACGCGTTCT-TC--GCCGACCAGAACGAGTTCGA 24050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569985305233320