Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq817 122 1e-21 seq4738 104 3e-16 seq3013 91.5 2e-12 seq248 89.7 7e-12 >seq817 Length=58121 Score = 122 bits (134), Expect = 1e-21 Identities = 101/121 (83%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 165750 GCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGC 165809 || |||||| || | |||||||| |||| |||||||||||||| ||||||||||||||| Sbjct 17881 GCCGACCTGATCGCCTGGGGCGCGATCGGCGCGCGCACCACCGAAAGCCAGGTGCACCGC 17822 Query 165810 GAGATGGCGTCGGCGCTGCCGCTGCCCATTGG-CTTCAAAAACAGCACCGACGGCAGCGT 165868 ||| |||| || | |||| || ||||| ||| |||||| ||| |||||||||||| ||| Sbjct 17821 GAGCTGGCCTCCGGGCTGTCG-TGCCCGGTGGGCTTCAAGAACGGCACCGACGGCAACGT 17763 Query 165869 G 165869 | Sbjct 17762 G 17762 >seq4738 Length=2816416 Score = 104 bits (114), Expect = 3e-16 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||| || |||||| || ||| || || || || || Sbjct 751465 ATCTACAAGGTGTTGAAGCAAGTTCACCCCGACAC---TGGCGTTTCGTCGAA--AG-CC 751412 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || ||||||||||| | || || || | | |||| ||| Sbjct 751411 ATGAGCATCATGAACAGCTTCGTCAACGACATCTTTGAGCGTATTGCCGCCGAAGCCTCC 751352 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| | || ||||||||| |||||| | ||||| ||||| |||||||| Sbjct 751351 CGCCTGGCCCACTACAACAAGCGTTCGACGATCACATCCCGCGAAATCCAAACCGCCGTC 751292 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | | | || || |||||| ||||||||| || || ||||||| Sbjct 751291 CGGCTTCTGCTCCCGGGAGAGTTGGCCAAGCACGCCGTTTCGGAAGGCACCA 751240 Score = 104 bits (114), Expect = 3e-16 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||| || |||||| || ||| || || || || || Sbjct 766039 ATCTACAAGGTGTTGAAGCAAGTTCACCCCGACAC---TGGCGTTTCGTCGAA--AG-CC 765986 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || ||||||||||| | || || || | | |||| ||| Sbjct 765985 ATGAGCATCATGAACAGCTTCGTCAACGACATCTTTGAGCGTATTGCCGCCGAAGCCTCC 765926 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| | || ||||||||| |||||| | ||||| ||||| |||||||| Sbjct 765925 CGCCTGGCCCACTACAACAAGCGTTCGACGATCACATCCCGCGAAATCCAAACCGCCGTC 765866 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | | | || || |||||| ||||||||| || || ||||||| Sbjct 765865 CGGCTTCTGCTCCCGGGAGAGTTGGCCAAGCACGCCGTTTCGGAAGGCACCA 765814 Score = 104 bits (114), Expect = 3e-16 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||| || |||||| || ||| || || || || || Sbjct 809575 ATCTACAAGGTGTTGAAGCAAGTTCACCCCGACAC---TGGCGTTTCGTCGAA--AG-CC 809522 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || ||||||||||| | || || || | | |||| ||| Sbjct 809521 ATGAGCATCATGAACAGCTTCGTCAACGACATCTTTGAGCGTATTGCCGCCGAAGCCTCC 809462 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| | || ||||||||| |||||| | ||||| ||||| |||||||| Sbjct 809461 CGCCTGGCCCACTACAACAAGCGTTCGACGATCACATCCCGCGAAATCCAAACCGCCGTC 809402 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | | | || || |||||| ||||||||| || || ||||||| Sbjct 809401 CGGCTTCTGCTCCCGGGAGAGTTGGCCAAGCACGCCGTTTCGGAAGGCACCA 809350 Score = 104 bits (114), Expect = 3e-16 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||| || |||||| || ||| || || || || || Sbjct 872095 ATCTACAAGGTGTTGAAGCAAGTTCACCCCGACAC---TGGCGTTTCGTCGAA--AG-CC 872042 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || ||||||||||| | || || || | | |||| ||| Sbjct 872041 ATGAGCATCATGAACAGCTTCGTCAACGACATCTTTGAGCGTATTGCCGCCGAAGCCTCC 871982 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| | || ||||||||| |||||| | ||||| ||||| |||||||| Sbjct 871981 CGCCTGGCCCACTACAACAAGCGTTCGACGATCACATCCCGCGAAATCCAAACCGCCGTC 871922 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | | | || || |||||| ||||||||| || || ||||||| Sbjct 871921 CGGCTTCTGCTCCCGGGAGAGTTGGCCAAGCACGCCGTTTCGGAAGGCACCA 871870 >seq3013 Length=6250 Score = 91.5 bits (100), Expect = 2e-12 Identities = 178/258 (69%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 257740 GCCGACTTGGGCGACGGGTGGGAGGCCTCGAGAATCTTGTGCCGGTTCTGGTCGATCAAC 257799 |||||| ||||| |||||| | | ||| | | |||||| | | |||||||| | Sbjct 6087 GCCGACAGCGGCGAGGGGTGGTTCGACGTGAGCACCAGGTGCCGCTGCGCGTCGATCAGC 6028 Query 257800 TTGCGCTTGCTCTGGGCGTCGCG-GCCCCACAGCATAAAGACCACCGGGTGTGGCGAGCG 257858 |||||| ||| |||| ||| |||||||||||| || ||| | || | | || || Sbjct 6027 GGCCGCTTGGACTGCGCGT-GCGAGCCCCACAGCATGAACACCGCGGGCCGCGCCG-CCG 5970 Query 257859 CTTGCTCACGAGGGAGATCACGGCGTCGGTAAAGGGCTCCCATCCGCGATCGCGGTGCGA 257918 | || |||| ||| |||||| |||||||| | | |||||| || || ||| Sbjct 5969 C--GCCCACGTGGGCGATCACCGCGTCGGTCAGCGCCTCCCAGCCCTTGCCGGCGTGGCT 5912 Query 257919 CCCCGGATGGCCGGCCTCGACCGTGAGGCACGTGTTGAGCAACAGCACGCCCTGGCGCGC 257978 | || ||| | | || || ||||| ||||| |||| ||||||||| | ||| || Sbjct 5911 GGCGGGCTGGGCCTCTTCCACGGTGAGCGTGGTGTTCAGCAGCAGCACGCCGTTGCGGGC 5852 Query 257979 CCACCCGACCAGGCAGCC 257996 |||| |||||||| ||| Sbjct 5851 CCACTTGACCAGGCTGCC 5834 >seq248 Length=2735815 Score = 89.7 bits (98), Expect = 7e-12 Identities = 161/236 (68%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 724907 CTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAA 724966 || ||| ||||||||||| || ||||| ||||| |||| | |||| || Sbjct 2272518 CTATATTTACAAGGTGCTGAAACAGGTCCACCCGGACACCGGAGTTTCATCG------AA 2272465 Query 724967 GTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGC 725026 | ||||| ||||||||| || ||||||||||| |||| || |||| | ||||| Sbjct 2272464 GGCCATGAGCATCATGAACAGCTTCGTCAACGACATCTTCGAGCGGATCGCTGCTGAGGC 2272405 Query 725027 CGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGC 725086 || |||| | | ||||||||| ||||| | || || || || ||||| Sbjct 2272404 TTCCCGTTTGGCTCATTACAACAAGCGTTCGACGATAACGTCTCGTGAAATTCAAACCGC 2272345 Query 725087 CGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || | ||| || ||| |||||| ||| |||||||||||||| |||| Sbjct 2272344 TGTTCGTTTGCTGTTGCCGGGAGAATTGGCCAAGCATGCCGTCTCCGAGGGTACCA 2272289 Score = 89.7 bits (98), Expect = 7e-12 Identities = 161/236 (68%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 724907 CTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAA 724966 || ||| ||||||||||| || ||||| ||||| |||| | |||| || Sbjct 2285408 CTATATTTACAAGGTGCTGAAACAGGTCCACCCGGACACCGGAGTTTCATCG------AA 2285355 Query 724967 GTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGC 725026 | ||||| ||||||||| || ||||||||||| |||| || |||| | ||||| Sbjct 2285354 GGCCATGAGCATCATGAACAGCTTCGTCAACGACATCTTCGAGCGGATCGCTGCTGAGGC 2285295 Query 725027 CGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGC 725086 || |||| | | ||||||||| ||||| | || || || || ||||| Sbjct 2285294 TTCCCGTTTGGCTCATTACAACAAGCGTTCGACGATAACGTCTCGTGAAATTCAAACCGC 2285235 Query 725087 CGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || | ||| || ||| |||||| ||| |||||||||||||| |||| Sbjct 2285234 TGTTCGTTTGCTGTTGCCGGGAGAATTGGCCAAGCATGCCGTCTCCGAGGGTACCA 2285179 Score = 86.0 bits (94), Expect = 9e-11 Identities = 158/232 (68%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||||||||| || ||||| ||||| |||| | |||| ||| || Sbjct 2305157 ATTTACAAGGTGCTGAAACAGGTCCACCCGGACACCGGAGTTTCATCG------AAGGCC 2305210 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || ||||||||||| |||| || || | | |||||| Sbjct 2305211 ATGAGTATCATGAACAGCTTCGTCAACGACATCTTCGAGCGGATTGCTTCTGAGGCCTCA 2305270 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||| | | ||||||||| ||||| | | || || || |||||||| || Sbjct 2305271 CGTTTGGCTCAATACAACAAGCGTTCGACGATAACCTCTCGTGAAATTCAGACCGCTGTC 2305330 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| | ||| || ||| |||||| |||||||| || || || |||| Sbjct 2305331 CGTCTGTTGTTGCCGGGTGAATTGGCCAAACACGCCGTTTCGGAAGGTACCA 2305382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177352378606634