Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4280 425 8e-114 seq98 138 2e-27 seq4284 116 5e-21 seq4600 107 3e-18 >seq4280 Length=912600 Score = 425 bits (470), Expect = 8e-114 Identities = 1017/1524 (67%), Gaps = 23/1524 (2%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||| || || | ||||| || |||||| || || || ||||| | ||| Sbjct 357403 TGGAATTCTCCGGACAGCACTCGTCGGTTGTAAACGTTGGAAGTGTACGGTTCGAATGAT 357344 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 || || ||||| |||||||| || || || || || ||||| || |||| | | | Sbjct 357343 TCGTTGTTTCCAAGAATTTGCGCCGTCGAAGCCGTGGGCATCGGAGCCAGAAGCAGGGAA 357284 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 || | || ||||| | ||| || || || | ||||||||| | || | | Sbjct 357283 TTGCGAACGCCATGCTTGGCGATCTTTTCCTTCAAGGCAGCCCAATCCCACATGTCTGTT 357224 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATAT 68958 || | ||||| | |||||| || |||| ||| || || | |||| ||| Sbjct 357223 GGCTCTTTGTTCCACATATCGTACTGCAGAACTCCCTTGCTCACCGGACATCCCGGATAG 357164 Query 68959 GTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAA 69018 ||||| || | || |||| ||| || | |||||| ||||| ||||| ||||| || || Sbjct 357163 GTTTCGTAGGTACCCTCCTTTTCGGCCAATTCACAGCTTGCTTCTAAGGCACCATAGTAG 357104 Query 69019 ATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGT 69078 || |||||||| || | || ||| || | ||| |||||| || ||| | |||||| | Sbjct 357103 ATAGTTTCGAAGATTTGCTGATTCAGTTTTTGAGCTTCTTCGCTGTCGTAAGGATAACGC 357044 Query 69079 AAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTA 69138 | | ||| || ||||| |||| |||||| || || || ||||| || | || | | || Sbjct 357043 ATCAAAATGAAGGCATCGGCCATTCCCTGGACACCGATTCCGATCGGGCGGTGGCGCATA 356984 Query 69139 TTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTT 69198 || || | | || ||||| | ||||| ||||||| || || ||||| || ||||| Sbjct 356983 TTGGATCGCTTGGCCTCTGGCACTGGATAGAAATTAATGTCGATGATTTTGTTGAGATT- 356925 Query 69199 CGGACTA-CTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCA-TC---TA 69253 | | | | | ||| | || || || ||||| | |||||| || ||| || | Sbjct 356924 CTTAGTGGCAATTTTTGCTACTTCTTTCAGTTTTTGGAAATCATAT-GTCTTGTCGGGTT 356866 Query 69254 TAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCAT--TAGAATT 69311 | || ||||| |||| ||| | || ||||| |||||||| || | |||| | | | Sbjct 356865 TCACGAACATGTTCAATGCGATGGACGCTAGGTTACAAACAGCAATTTCATCCTTGGAGG 356806 Query 69312 TGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTG 69371 | |||| | || || || || || || || ||||| || || | || ||||| Sbjct 356805 AG--TATTCAACAATTTCGGTGCAAAGGTTTGAGCACTTGATGGTTCCGATGTTCTGCTG 356748 Query 69372 ATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTG 69431 |||||| || |||| || || ||||| || || || ||||| ||| ||||| | || Sbjct 356747 ATTACTTTTCCTGTTGCAAGCATCCTTATACAGCATGTACGGAACACCGGTTTCCACTTG 356688 Query 69432 AGATTCGATAATAGATTTCCAA--ACGACCCTAGCATTTATTACGGTCT---TGTAACGC 69486 || ||||| |||| | || || | || | || | || || |||| || Sbjct 356687 GGACTCGAT----GATTGCAAACCACAAATCTTGGGCTT-TCACTTTCCGAATGTATCGT 356633 Query 69487 TTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546 || ||| ||| ||| || || ||| || || || ||||| || | Sbjct 356632 CCTTCCGCTTCGTATGATGTGTACAGTTTTTCAAACTCCTCACCCCATGTGTCGGATAGC 356573 Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 ||||||||||||| || |||||||| |||| | || | | ||| ||||| ||||| Sbjct 356572 CCAGGACATTCATGAGGGCACATCAAGCACCAGTCTTCGTTAGCCTCCACTCGCTTCATG 356513 Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 || | ||| ||||||||||| || || | || |||| || |||||| || Sbjct 356512 AACAAATCCGGAATCCAAAGCGCGTAGAACATGTCCCTGGCTCGGACATCTTCAGCGCCG 356453 Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726 || || || || | ||| || ||||| | || ||| |||||| ||||| ||||| || Sbjct 356452 GTGTTCTTCTTTAAATCCAGGAACTCGAAAACATCGCCATGCCACGGTTCGAGATAAATG 356393 Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786 || | | | || || || || || ||||||||||| | ||| ||||||||||||| || Sbjct 356392 GCAAAGGCACCTGGCCGCTTGTTACCTCCCTGATCAACGTACTTGGCAGTGTTATTGTAC 356333 Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 || |||| ||| ||||| | ||| || || | || || || |||| ||| || |||| Sbjct 356332 ACCCTCAACATGGGAATCAAACCGTTGGAAATTCCGTTCGTGCCAGCAATGTAGGTTCCC 356273 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 |||| | || | || | || || |||||||| ||| ||| || || | ||| Sbjct 356272 TTTGCTCTGATGCAATGAACATTCAGGCCGATTCCTCCAGCCGATTTCGAAATCAACGCA 356213 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 || | ||||| ||||| || || ||||| ||||| || || ||||| | | || || Sbjct 356212 CACTGCTTCAAGGTGTCGTAGATTCCCTCGATGCTGTCGTCGCTCATGGTCAACAGGAAG 356153 Query 69967 CAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTG 70026 ||| |||| ||| | | || |||| ||| | || || || || |||||| Sbjct 356152 CAGGACGACAGCTGAGGTCGGCAGGTGGCCGCCGCAAACATCGTTGGCGAAGCATGAGTG 356093 Query 70027 AACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATG 70085 || || | || || |||| |||||| || ||||| || | || ||||| | | | || Sbjct 356092 AAATATCTCTCCGACAGCAAATTGTACGTCTCAATGGCAGCGTCGATATCTTCGCCG-TG 356034 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 ||||| || || || ||||||||||| ||||| || ||||| || | || || || Sbjct 356033 GATTCCAATGGCAACCCGCATCAACATGTGCTGTGGCCGTTCCACGATCTTGCCTTTGAT 355974 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 || | || || ||| |||||| || || || || |||||||| || |||||| | Sbjct 355973 CTTGAGCAAATACGATCGTTCCAGCGTCTTGAAGCCGAAATAGTTATAGCCAAAGTCCCG 355914 Query 70206 TTCGTAAATAATAACAGAATTTAG 70229 |||||||| ||| | ||||| || Sbjct 355913 ATCGTAAATGATAGCCGAATTCAG 355890 Score = 93.3 bits (102), Expect = 6e-14 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 ||||||||||| || || || ||||| ||||| ||||| || | |||| |||||||| Sbjct 359621 GCGGGTTTTGTTCGCAGGTAATACATTCCGGTCTTCAGTCCCATTTTCCACCCGTAGAAG 359562 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || || || |||||| || | || || || | ||||| || | |||||| Sbjct 359561 TGAATCGAGGTAAGTTTGCCGTAGTTGGGCTCAGCCACGTGAATGTTGAACGATTGCGAC 359502 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGA-GGA-ATTT 68572 |||||||||||||| || | ||| || ||||| || || |||| |||| ||| |||| Sbjct 359501 TGATCGATGAAAGCACCACGATCGGCTGCCATCTTGATGCAACTC--TTGACGGAGATTT 359444 Query 68573 CCCA 68576 |||| Sbjct 359443 CCCA 359440 >seq98 Length=5729030 Score = 138 bits (152), Expect = 2e-27 Identities = 357/542 (66%), Gaps = 3/542 (1%) Strand=Plus/Plus Query 39653 ATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATG 39712 || ||||||| || ||||| || |||||| | || |||||||| || | |||| ||| Sbjct 2603495 ATCAATTCGTAGGAGAATGTTAGCCCAGGCGTCAGTCCACGCTTCTTCAACCAATTGATG 2603554 Query 39713 GCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCT 39772 | || ||| |||| ||||| || |||| || | || || || || | | ||| Sbjct 2603555 GATGCGAAACTTCCACTGAAGAAAATTTCTTCCACAACGGCGAAGGCTACGACGCGTTCT 2603614 Query 39773 CCGTAACTTGTATCATTA--TGTAT-CCACTTCTGTGCCCAATCAGCTTTCTTCTTTACA 39829 ||| | | | | || || || ||| ||| || | | |||||||||||||| ||| Sbjct 2603615 CCGAAGTTGGCCTTTTTGCTTGAATTCCAGTTCAATGTCTATTCAGCTTTCTTCTTCACA 2603674 Query 39830 CAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATAT 39889 || |||| | || || ||||| || | || | ||| | ||| || ||| Sbjct 2603675 CAGGGCAGATTATCGATGGCATTGAACAAGTACTCCCTTTGTTTGGAATCACGAATATAA 2603734 Query 39890 GTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCG 39949 ||||| || | ||| |||||||| |||| |||||| || ||||| |||||||| Sbjct 2603735 GTATCGATAAGCAGCGAGTACATTTCACTGTGGACGTTTTCCATTGCCATTTGAAATCCA 2603794 Query 39950 TAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCA 40009 || || || | ||| || || | || | ||| | || | |||| | | || || Sbjct 2603795 TAGAAGCAACGTGCCTCGGTGACCTGGAGCTCCTGGCTGAAACGTTCCACGAGGTTCTCG 2603854 Query 40010 TTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCA 40069 |||| | ||||| |||| |||| || |||||||||||| || || | || || Sbjct 2603855 TTCATGCTGCCATCGGAAGCGACAAAGAAGGCCAATACATGTGAGATGAAGTGCTTCTCG 2603914 Query 40070 TCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTC 40129 | | | | || | ||| || | |||||| || | ||| ||||| || |||| Sbjct 2603915 CCTGACTTGAGCTTTTCCCAATCGGCTAGATCTTTAGAGAGATCGACTTCCTCTATTGTC 2603974 Query 40130 CAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAA 40189 || | || |||||||||| || ||||| | ||| || || |||| || || || ||| Sbjct 2603975 CAGAGAGATGCCTCTGCCTACTTCTACATCTGCCAAATGCCATGATACTGGATGGGGAAA 2604034 Query 40190 AT 40191 || Sbjct 2604035 AT 2604036 >seq4284 Length=891408 Score = 116 bits (128), Expect = 5e-21 Identities = 268/399 (67%), Gaps = 11/399 (3%) Strand=Plus/Minus Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 || |||||| || || ||||| || || ||| | ||||||||||| || | || Sbjct 85540 CAGTCTATCAGCCACGAATTCAATATACTGCGACATAAGGTCACAATTCATGCCAAGCAG 85481 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCT--GTTATT 39562 | ||| || || || | ||| || ||||| | |||||| || || || | || | Sbjct 85480 GTCAACCGGAAGGGCTTTCGTCAGGAACTCCTGTTCGATCAGGACTGCTTCGCGGATAAT 85421 Query 39563 ATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 ||||| || || | | ||| || | | || ||| ||||| | || || Sbjct 85420 CTCGATCACACGTTCTTGTGAT--GGTTTCTGTACCAGATATTTGAACATAAGACAAGCA 85363 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 ||||| || ||||| || || | || |||||||| || ||||| || |||||| Sbjct 85362 AAGTCCGTGTGCAGGCCTTCGTCACGTGAGATCAATTCGTTGGAGAATGTTAGCCCAGGC 85303 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCT 39742 || || |||||||| || | |||||| |||| || ||| |||| |||||| || ||| Sbjct 85302 ATCAGTCCACGCTTCTTCAACCAAAAGATGGATGCGAAACTTCCACTAAAGAAAATACCT 85243 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT-----ATCC 39797 || || || || || || || | | |||||| || ||| | || || |||| Sbjct 85242 TCCACGGCGGCGAAGGCTACGACGCGTTCTCCG-AAGTTGGC-CTTTTTGCTTGAAATCC 85185 Query 39798 ACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCA 39836 | ||| |||||| |||||||||||||| ||||| |||| Sbjct 85184 AGTTCAATGCCCAGTCAGCTTTCTTCTTCACACAGGGCA 85146 Score = 89.7 bits (98), Expect = 7e-13 Identities = 177/262 (68%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946 || ||||| || | ||| |||||||| |||| ||||| || || || |||||| Sbjct 84830 TAAGTATCAATAAGCAGCGAGTACATTTCACTGTGGACATTTTCCATTGCAATTTGAAAT 84771 Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTT 40006 ||||| || || | ||||| || | || ||||| | || | |||| | | || Sbjct 84770 CCGTAGAAGCAACGCGCTTCGGTGACCTGGACCTCCTGGCTGAAACGTTCCACAAGGTTC 84711 Query 40007 TCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTT 40066 || ||||| || ||||| ||||||||| || |||| |||||| || || | || Sbjct 84710 TCGTTCACGATGCCATCGGAAGCGGCAAAGAAGGCCAGCACATGTGAGATGAAGTGCTTC 84651 Query 40067 TCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCT 40126 || ||| | | || | ||| || | |||||| || | ||| ||||| || || Sbjct 84650 TCGCCGGACTTGAGCTTTTCCCAATCGGCCAGATCTTTAGAGAGATCGACTTCCTCTACT 84591 Query 40127 GTCCAAAACGACGCCTCTGCCT 40148 ||||| || || |||||||||| Sbjct 84590 GTCCAGAAAGATGCCTCTGCCT 84569 >seq4600 Length=436310 Score = 107 bits (118), Expect = 3e-18 Identities = 262/397 (66%), Gaps = 0/397 (0%) Strand=Plus/Plus Query 39795 TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854 |||| ||| || | | |||||||||||||| ||||| |||| | || || ||||| | Sbjct 110418 TCCAGTTCAATGTCTATTCAGCTTTCTTCTTCACACAGGGCAGATTATCGATGGCATTGA 110477 Query 39855 AGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTT 39914 | | || | ||| | ||| || ||| ||||| || | ||| ||||||| Sbjct 110478 ACAAGTACTCCCTTTGTTTGGAATCACGAATATAAGTATCGATAAGCAGCGAGTACATTT 110537 Query 39915 CTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTT 39974 | |||| |||||| || || || |||||||| || || || | ||| || || | | Sbjct 110538 CACTGTGGACGTTTTCCATTGCAATTTGAAATCCATAGAAGCAACGTGCCTCGGTGACCT 110597 Query 39975 GTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAA 40034 | | ||| | || | |||| | | || || |||| | ||||| |||| ||| Sbjct 110598 GGAGCTCCTGGCTGAAACGTTCCACGAGGTTCTCGTTCATGCTGCCATCGGAAGCGACAA 110657 Query 40035 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCAT 40094 | || |||||||||||| || || | || || | | | | || | ||| || Sbjct 110658 AGAAGGCCAATACATGTGAGATGAAGTGCTTCTCGCCTGACTTGAGCTTTTCCCAATCGG 110717 Query 40095 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGT 40154 | |||||| || | ||| ||||| || |||||| | || |||||||||| || | Sbjct 110718 CTAGATCTTTAGAGAGATCGACTTCCTCTATTGTCCAGAGAGATGCCTCTGCCTACTTCT 110777 Query 40155 ACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 |||| | ||| || || |||| || || || ||||| Sbjct 110778 ACATCTGCCAAATGCCATGATACTGGATGGGGAAAAT 110814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686867954685480