Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_027340.1 Length=162160 Score E Sequences producing significant alignments: (Bits) Value seq888 129 6e-25 >seq888 Length=58548 Score = 129 bits (142), Expect = 6e-25 Identities = 269/401 (67%), Gaps = 0/401 (0%) Strand=Plus/Plus Query 58356 TTGATCTGAACACCGTAGTCAGTACGGCGCTCGCGGTTGTTCTCAATACCACGGTTGTTC 58415 |||||||| ||||| ||||| | |||| |||||| | ||| | ||| ||||||||| Sbjct 24158 TTGATCTGCACACCATAGTCCAAATGGCGAATGCGGTTTTCCTCCACACCGCGGTTGTTC 24217 Query 58416 TTCAGCACGATCATGTCATCGAACTGGAAGTGCCACATCGGGTAATACATGGTTGCTGAG 58475 || ||||| | || || | | | |||||||| ||||| ||| || || | Sbjct 24218 TTGAGCACCAGCAGCGATTCCACTTCCAGGTGCCACAGGGGGTAGAACAGCGTGGCCGCC 24277 Query 58476 CCGCCACGGATACCACCCTGAGAACAGCTCTTCAGATCACCAACGAACTTCTTGATGAAC 58535 || || || | ||| ||||| || ||| ||| | || | |||| |||||| ||| Sbjct 24278 CCTCCCCGCACACCGCCCTGCGAGCAGGACTTGACGGCAGCCTGGAACATCTTGAAGAAG 24337 Query 58536 GGGATCGTACCGGTATGAGTCATCTCACCGTCGCGGATAGAGGAACCCAGGGCACGGATA 58595 || | || || || | || ||| | ||||| | |||| |||||||||| Sbjct 24338 GGCAGGCAGCCCGTGTGCTGCGCTTCGCCGCCCCGGATTTCGCTGCCCACGGCACGGATA 24397 Query 58596 GCGCCGAAGTCAACACCGATACCAGCACGCTTAGACACGTATTTCACGATTGCGGTGCCA 58655 |||| | | ||||| ||||| |||| |||||||| || ||||| ||| || Sbjct 24398 CGGCCGCCATTGATGCCGATGCCAGCGCGCTGCGACACGTACTTGACGATGGCGCTGGTG 24457 Query 58656 GTAGCAGTAATGCTGTCCAGGGTGTCACCAGACTTGATCAGGACACATGAGCTGAACTGA 58715 || || | |||| |||||| |||| | | | |||||| || || ||||||||||| Sbjct 24458 GTGGCGTTGATGCCATCCAGGCTGTCGTCGCATTCGATCAGCACGCACGAGCTGAACTGG 24517 Query 58716 CGGGTACGGGTACGCACGCCTGCCATGATAGGTGTTGGGAG 58756 || | | || |||||||| | ||| || || || || || Sbjct 24518 CGCATGGGCGTGCGCACGCCGGACATAATGGGGGTAGGCAG 24558 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 56449 cccTGAATGGAGTCCAACATAACCTGGCGCTTCAGGTTGCTGATGAAGATATGCTTCTCG 56508 ||||| |||||||||| || |||| |||||||||||||||||||| ||||||||| Sbjct 22619 CCCTGGATGGAGTCCAGCAGCGTCTGGTATTTCAGGTTGCTGATGAAGATGTGCTTCTCG 22678 Query 56509 TGCTCTTCCAGAGACTCAAAATC-AGCCTTGTCTTTGGTGACGTCAACTTCTTCAGGACG 56567 || || ||| || |||| |||| ||| | |||| ||| |||||||| || || Sbjct 22679 TGGTCCGGCAGGTTCTGGTAATCGAGCC-GGTCCTGCGTGATGTCTACTTCTTCCGGGCG 22737 Query 56568 CCAGAA 56573 |||||| Sbjct 22738 CCAGAA 22743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518753151806400