Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_027348.2 Length=73882 Score E Sequences producing significant alignments: (Bits) Value seq4651 129 3e-25 seq4037 109 3e-19 >seq4651 Length=474197 Score = 129 bits (142), Expect = 3e-25 Identities = 134/172 (78%), Gaps = 8/172 (5%) Strand=Plus/Minus Query 21683 TGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATCGCCAGC 21742 ||| | ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| Sbjct 349852 TGCCAGCTCTATCAGCGCAGCGCCGACATCTTCCTGGGCGTTCCCTTCAACATCGCCAGC 349793 Query 21743 TACGCGCTGCTGACGCACCTCATGGCGGCCACGGT---CGGCATGCAGGCCGAG-AAGTT 21798 |||||||| | ||| | |||| |||| ||| |||| | | |||| | | || Sbjct 349792 TACGCGCTCTTCACG---ATGATGGTGGCCCAGGTGTGCGGC-TACGCGCCGGGCGATTT 349737 Query 21799 CATCTGGTCTGGCGGTGACTGCCACCTGTACTCGAACCACATGGACCAGGCC 21850 | | ||| | ||||| ||||||||||| ||| ||||||| | || |||||| Sbjct 349736 CGTGTGGACCGGCGGCGACTGCCACCTCTACCTGAACCACCTCGAGCAGGCC 349685 Score = 107 bits (118), Expect = 9e-19 Identities = 279/416 (67%), Gaps = 16/416 (4%) Strand=Plus/Minus Query 21132 GCAAGTCTGACCGCACTGGCACAGGCACCAAGTCCGTATTCGGTGCCCAGATGGAATTCG 21191 ||||| |||||||| ||||| |||||| || || ||||| |||||| |||| Sbjct 350283 GCAAGATGGACCGCACCGGCACCGGCACCCTCTCGGTCTTCGGCTGGCAGATGCGCTTCG 350224 Query 21192 ATCTGCGTGAGGGCTTCCCCCTGCTC--CAG-AAGAAGA-CCACCCCCTTCACCACGATC 21247 |||| || || || || |||||| || |||||| |||| ||| | ||||| Sbjct 350223 ATCTCGCCGACGGTTTTCCGCTGCTCACCACCAAGAAGCTCCACACCCG----CTCGATC 350168 Query 21248 TTCACCGAGCTCTCGTGGATGATGCAGGGCCTGACCAATGTGAACTGGCTACAG--CAAA 21305 || |||||| |||| | ||| ||| ||||| | | || || ||| Sbjct 350167 ATCCACGAGCTGCTGTGGTTCCTGCGCGGCGACACCAACATCCGGTATCTCAAGGACAAC 350108 Query 21306 AGGGCTGCCACATCTGGGACGAATGGGCTGGTCCTGATGGCGGCCTCGGCCCGATCTATG 21365 | || | | | |||||||||| ||||| | | |||| || |||||| | || | Sbjct 350107 AAGGTTTCGA--TCTGGGACGAGTGGGCCGACGAGAACGGCGAGCTGGGCCCGGTGTACG 350050 Query 21366 GTGCCCAGTGGCGCAGCATCCAAGGCCCCGATGGAAAGAACATCGACCAGCT-GGCCAAG 21424 | ||||||||| || || ||||| || | |||||||||| | ||||| Sbjct 350049 GCAAGCAGTGGCGCCGCTGGGAAACGCCCGACGGGCGCAGCATCGACCAGATCGGCCA-- 349992 Query 21425 GCACAA-GAGCTGCTGCTGAACGACCCGGACAGCCGCCGCATCATCGTGAATGCCTGGAA 21483 || || ||| ||| ||| |||||||| ||||||| ||||||| |||||||| Sbjct 349991 GCTCATCGAGGCGCTCAAGAAGAACCCGGACTCCCGCCGCCACATCGTGTCGGCCTGGAA 349932 Query 21484 CGTGGCCGAGCTCGACCAGATGGCCCTGACACCGTGCCATGCGATGTTCCAGTTCT 21539 | |||||| | |||| ||||||||| | || ||||| ||| |||||||||||| Sbjct 349931 CCCGGCCGACGTGGACCGCATGGCCCTGCCGCCCTGCCACGCGCTGTTCCAGTTCT 349876 >seq4037 Length=4543 Score = 109 bits (120), Expect = 3e-19 Identities = 282/423 (67%), Gaps = 10/423 (2%) Strand=Plus/Plus Query 21122 CAGGGCGAGGGCAAGTCTGACCGCACTGGCACAGGCACCAAGTCCGTATTCGGTGCCCAG 21181 || |||| || |||| |||||||| ||||| ||||||||| ||| ||||| |||| Sbjct 4091 CACGGCGTGGACAAGGGCGACCGCACGGGCACGGGCACCAAGAGCGTGTTCGGCTACCAG 4150 Query 21182 ATGGAATTCGATCTGCGTGAGGGCTTCCCCCTGCT--CCAG-AAGAAGAC-CACCCCCTT 21237 ||| ||||| ||| |||||||| || ||| | ||| |||||| |||| | Sbjct 4151 ATGCGCTTCGACCTGAACGAGGGCTTTCCGCTGGTGACCACCAAGAAGGTGCACC----T 4206 Query 21238 CACCACGATCTTCACCGAGCTCTCGTGGATGATGCAGGGCCTGACCAATGTGAACTGGCT 21297 | | ||| || |||||| |||| | | || | | | |||||||| Sbjct 4207 GAAGTCCATCATCGTCGAGCTGCTGTGGTTCCTTACCGGTTCCAGCGACAACAACTGGCT 4266 Query 21298 ACAGCAAAAGGGCTGCCAC-ATCTGGGACGAATGGGCTGGTCCTGATGGCGGCCTCGGCC 21356 || || ||| | || ||||||||||| ||||| | || ||| || | |||| Sbjct 4267 GAAGGAACGCGGC-GTGACGATCTGGGACGAGTGGGCGCGCGAAGACGGCAGCTTGGGCC 4325 Query 21357 CGATCTATGGTGCCCAGTGGCGCAGCATCCAAGGCCCCGATGGAAAGAACATCGACCAGC 21416 | |||| || | ||||||||||| | || | || | | |||||||| Sbjct 4326 CCGTCTACGGCGTGCAGTGGCGCAGTTGGCCCACACCGGGCGGCGGGCATATCGACCAAA 4385 Query 21417 TGGCCAAGGCACAAGAGCTGCTGCTGAACGACCCGGACAGCCGCCGCATCATCGTGAATG 21476 | | ||| || |||| ||| |||| ||| |||||||||||||| | | Sbjct 4386 TCAGCCAGGTGATCGACACGCTGAAGAAGAACCCCGACTCGCGCCGCATCATCGTCAGCG 4445 Query 21477 CCTGGAACGTGGCCGAGCTCGACCAGATGGCCCTGACACCGTGCCATGCGATGTTCCAGT 21536 | ||||||||||||||||| ||||||||||| |||| || ||||| ||| | ||||||| Sbjct 4446 CGTGGAACGTGGCCGAGCTGGACCAGATGGCGCTGATGCCCTGCCACGCGTTCTTCCAGT 4505 Query 21537 TCT 21539 ||| Sbjct 4506 TCT 4508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236283900425111