Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq4297 241 5e-59 seq817 221 4e-53 seq1853 217 5e-52 seq399 187 9e-43 seq2697 167 9e-37 seq207 125 3e-24 seq333 93.3 2e-14 seq208 87.8 7e-13 seq36 80.6 1e-10 >seq4297 Length=3160936 Score = 241 bits (266), Expect = 5e-59 Identities = 239/290 (82%), Gaps = 21/290 (7%) Strand=Plus/Plus Query 22163 ATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCG 22222 |||||||||| ||||| ||||||| | |||||||| ||| || ||||| |||||| || Sbjct 2471654 ATTCATTAAGAATTCTAGCGACATGCATGCCATCACGAACAGCCTGATGGACCTGACTCC 2471713 Query 22223 CCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGG 22282 ||||||| |||||| ||||| |||||||||||||||||| |||||||||| |||| Sbjct 2471714 CCAGCGGAATCAGCGACTTGTACACTTGCGTATAATATTTGCACATGGTGAAA--CGGGG 2471771 Query 22283 CGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGAT 22342 || ||||||| ||||||||||||| | |||||||| |||||||||| ||| | ||| Sbjct 2471772 AGAGCAAGTTGT-CATATTGGCCACG-ATCAATCAAAA-TGGTGAAACT--CCCCGTGAT 2471826 Query 22343 TGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCAC 22402 ||||||||||| |||||||||||| || || |||||| | ||||||||||| ||||| Sbjct 2471827 TGGCTGAGACG--AAACATATTCTCCATGAA-CCTTTA-CGCAATAGGCCAGG-TTTCA- 2471880 Query 22403 CGTAACACGCCACATCTTGCGAATAT-ATGTGTAGAAACTGCCGGAAATC 22451 ||| |||||||||||| ||| ||| |||||||| ||||| |||||||| Sbjct 2471881 CGT-ACACGCCACATC-TGC---TATGATGTGTAG-AACTG-CGGAAATC 2471923 >seq817 Length=58121 Score = 221 bits (244), Expect = 4e-53 Identities = 242/301 (80%), Gaps = 17/301 (6%) Strand=Plus/Minus Query 22525 CTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGGAATTCCGGATG-AGCATT 22583 || |||| ||| |||| ||||||| ||||||||||||| |||| |||||||| | |||| Sbjct 35476 CTGTCCCCTATAACCACCTCACCGAATTTCATTGCCATATGGAACTCCGGATGAAACATT 35417 Query 22584 CATC-AGGCGGGCAAGAATGTGAATAAAGG-CCGGATAAAACTTG-TGCTTATTTTTC-T 22639 || | |||| || |||||||||||||| || ||||||| ||| |||||||| | | | Sbjct 35416 GCTCAATCCGGGTAACAATGTGAATAAAGGCCCTGATAAAAATTGTTGCTTATTATGCTT 35357 Query 22640 TTACGGTCT-TTAAAAAGGCCGTAATATCC-AGCTG-AACGGTCTGGTTATAGGTACATT 22696 |||| |||| || |||||||||||||||| ||||| ||||||| ||||| |||||| || Sbjct 35356 TTACAGTCTACTACAAAGGCCGTAATATCCAAGCTGAAACGGTCCGGTTAAAGGTACCTT 35297 Query 22697 GAGCAACTGAC--TGAAATGC-CTCAAAAT-GTTCTTTAC-GATGCCATT-GGGATATAT 22750 || | |||||| | | ||| ||||||| ||||||||| || || || ||||||||| Sbjct 35296 GACCGACTGACTTTACATTGCTTTCAAAATGGTTCTTTACTAATACCCTTAGGGATATAT 35237 Query 22751 CAACGGTGGTATA-TCCAGTGA-tttttttCTCCATT-TTAGCTTCCTTAGCTCCTGAAA 22807 || | | |||||| |||||||| |||||||||| ||| || |||||| |||||| |||| Sbjct 35236 CATCAGAGGTATATTCCAGTGATTTTTTTTCTCTATTATTGGCTTCCATAGCTCGAGAAA 35177 Query 22808 A 22808 | Sbjct 35176 A 35176 >seq1853 Length=10216 Score = 217 bits (240), Expect = 5e-52 Identities = 228/300 (76%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 22123 AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG 22182 |||||||||| ||||||||||||||||||||||| ||||| || |||||||| | Sbjct 302 AATTACGCCCATCCCTGCCACTCATCGCAGTACTGAATCGATTCAGTATGCATTCTGTGG 243 Query 22183 ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG 22242 ||| ||||||||||| | |||||||||||||| ||||||| || |||||||||| Sbjct 242 ACACGGAAGCCATCAAATTGCCCATGATGAACCTGAGTCGCCAGAAGCTGCAGCACCTTG 183 Query 22243 TCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG 22302 ||| ||||| | || | | ||| ||| || ||||| |||| ||||| | | |||| Sbjct 182 CCGCGTTGCGAACAAAACTGGCCAATGTCGACAACGGATGCGATGAAGTGGACAATATAT 123 Query 22303 GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA 22362 |||| |||| |||| | || |||||||||||| || |||||||| |||| ||| Sbjct 122 GCCAAATTTACCCCAAAGCGGGAGAAACTCACCCATGGCCTGGCTGAGCCGAATCACACG 63 Query 22363 TTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGC 22422 ||||||||| ||||| ||| ||||| || || || || | ||||||||||||| || Sbjct 62 TTCTCAATACACCCTATAGCCGAATAGACCCGGGTTATTCCCTCACACGCCACATCTAGC 3 >seq399 Length=209802 Score = 187 bits (206), Expect = 9e-43 Identities = 160/194 (82%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 22144 TCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG-ACATGGAAG-CCATCACAAA 22201 || ||| ||||||| |||| | |||||||||||||||| ||||||| | ||||||| || Sbjct 199213 TCGTCGAAGTACTGATGTACTCTATTAAGCATTCTGCCGGACATGGATGGCCATCACCAA 199154 Query 22202 CGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATT 22261 | | ||| |||||||||||||| | ||||||| ||||||||||| |||| ||||||| | Sbjct 199153 CAGTGTGAAGAACCTGAATCGCCCGTGGCATCATCACCTTGTCGCATTGCATATAATACT 199094 Query 22262 TGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAAC 22321 |||| || |||||||| ||| ||||||| |||||| |||| |||| | | || |||| Sbjct 199093 TGCCGATTGTGAAAACAGGGTCGAAGAAATTGTCCGAATTGTTCACGATAGACTC-AAAC 199035 Query 22322 TGGTGAAACTCACC 22335 |||||||||||||| Sbjct 199034 TGGTGAAACTCACC 199021 >seq2697 Length=1458457 Score = 167 bits (184), Expect = 9e-37 Identities = 138/163 (85%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 22123 AATTACGCCCC-GCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC 22181 ||||||||||| |||||||||||||| ||||| |||| ||||||||||| | Sbjct 350074 AATTACGCCCCCGCCCTGCCACTCATTCTTATACTGGTGTACGCTTTTAAGCATTCTTTC 350133 Query 22182 GACATGGAA-GCCATCACAAACGGCATGATGAA-CCTGAATCGCCAGCGGCATCAGCACC 22239 ||| ||||| ||||||||||||||| ||||||| ||||| |||| ||||||||||||||| Sbjct 350134 GACCTGGAAAGCCATCACAAACGGCTTGATGAAACCTGAGTCGCTAGCGGCATCAGCACC 350193 Query 22240 TTGTCGCCTTGCGTATAATA-TTTGCCCATGGTGAAAACGGGG 22281 |||||| | ||||||| ||| ||||||||||||||| |||||| Sbjct 350194 TTGTCGGCGTGCGTATTATATTTTGCCCATGGTGAATACGGGG 350236 >seq207 Length=1189423 Score = 125 bits (138), Expect = 3e-24 Identities = 180/251 (72%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 22208 GATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA 22267 ||||||||||||||||||||||| | | ||||||||||||||| ||| | | | ||| Sbjct 240383 GATGAACCTGAATCGCCAGCGGCG-CTGAACCTTGTCGCCTTGCTCATACTGCTAGTCCA 240325 Query 22268 TGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGA 22327 ||| ||| ||| ||||||||||||||||||| | | ||||| | |||| || || | Sbjct 240324 TGGGGAACACGTGGGCGAAGAAGTTGTCCATGTCGACCACGATGCCATCACAAACGGCAA 240265 Query 22328 AACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAAT 22387 | |||| || ||| ||| | || ||| | |||||| | ||| || | Sbjct 240264 GATGCACCTGAGGCTTGACTGGCATCAACAACTTGTTCTCATGCGTATCGTTATGGGCCT 240205 Query 22388 AGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGA 22447 |||| | || | |||| |||| | || |||| ||||||||||||||||||| | Sbjct 240204 AGGCGAAGTCGGCGGCGTAGCACGTGTCCTCATGCGTCTATATGTGTAGAAACTGCCTG- 240146 Query 22448 AATCGTCGTGG 22458 ||| ||||||| Sbjct 240145 AATTGTCGTGG 240135 >seq333 Length=300142 Score = 93.3 bits (102), Expect = 2e-14 Identities = 83/99 (84%), Gaps = 4/99 (4%) Strand=Plus/Plus Query 22175 TTCTGC-CGACATGGAA-GCCATCACAAACGGCATGATGAACCT-GAATCGCCAGCGGCA 22231 |||||| ||||||| | || ||||||| |||||||||||||| || ||| ||||| | Sbjct 127978 TTCTGCTCGACATGATACGCGCTCACAAAAGGCATGATGAACCTGGACTCGTCAGCGTCT 128037 Query 22232 TCAGCACCTTGTCGCCTTGCGTATAATA-TTTGCCCATG 22269 |||||| |||||||| |||||||||| | |||||||||| Sbjct 128038 TCAGCAACTTGTCGCATTGCGTATAAAATTTTGCCCATG 128076 >seq208 Length=3595646 Score = 87.8 bits (96), Expect = 7e-13 Identities = 192/277 (69%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 22529 CCCATATCACCAGCTCACCGTCTTTCATTGCCATACGGAATTCCGGATGAGCATTCATCA 22588 |||||| | |||| || ||||| |||||||| |||| || ||||| ||||| ||| | | Sbjct 527838 CCCATAGCTCCAGGTCGTCGTCTATCATTGCCTTACGAAAGTCCGGTTGAGCCTTCGTTA 527897 Query 22589 GGCGGGCAAGAATGTGAATAAAGGCCG-GATAAAACTTGTGCTTATTTTTCTTTACGGTC 22647 | | || || ||| || ||| || || | ||||||||| ||| | ||| ||| | | Sbjct 527898 TGATGTCATGATTGTTCATCAAGACCCCGACACAACTTGTGCATATCTCTCTCTACAGAC 527957 Query 22648 TTTAAAAAGGCCGTAATATCCAGCTGAACGGTCTGGTTATAGGTACATTGAGCAACT-GA 22706 | | ||||||||| ||| || | ||| || |||||| | | || |||| || || Sbjct 527958 AT-AGAAAGGCCGTCATAGCCCTTTAAACACTCATGTTATACTTCCTTT-AGCATCTTGA 528015 Query 22707 CTGAAATGCCTCAAAATGTTCTTTACGATGC-CATTGGGATATATCAACGGTGGTA-TAT 22764 ||| |||| ||| || ||| | | |||| |||| | ||| || || || Sbjct 528016 ACGAATACGCTCAGAATTGGCTATACCACGTTCATTCC-ATATCTAAACCGTAGTGGTAA 528074 Query 22765 CCAGTG-AtttttttCTCCATTTTAGCTTCCTTAGCT 22800 |||| ||||| |||||||||||||| | || |||| Sbjct 528075 TCAGTTTATTTTCTTCTCCATTTTAGCCTGCTGAGCT 528111 >seq36 Length=1339553 Score = 80.6 bits (88), Expect = 1e-10 Identities = 70/83 (84%), Gaps = 3/83 (4%) Strand=Plus/Plus Query 22402 CCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACT-GCCGGAAATCGTC-GTGGT 22459 |||||||| ||||||||| ||| ||||| | | ||| ||| ||||||||||||| |||| Sbjct 159637 CCGTAACATGCCACATCTGGCGTATATAAGGGCAGAGACTTGCCGGAAATCGTCTCTGGT 159696 Query 22460 ATTCACTC-CAGAGCGATGAAAA 22481 |||||||| ||||||||| ||| Sbjct 159697 ATTCACTCTAAGAGCGATGTAAA 159719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184434380828526