Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4491 98.7 1e-15 >seq4491 Length=604133 Score = 98.7 bits (108), Expect = 1e-15 Identities = 172/248 (69%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 181805 GTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTT 181864 ||| |||||||| ||||| ||||| || ||||||| || |||| || || ||||| Sbjct 525039 GTCCTTACCACCGGCAAGACGAGTACCGAACTGACCACTCGGGACAAGCAGATTGATGTT 525098 Query 181865 GTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCA-AGGGACACTTCAC 181923 ||| || ||| | | |||| || || |||||| ||||| || ||| ||||| Sbjct 525099 GTTACTTCCGACATAATTTTGAGCCAGATTGACAATGGTA-CCGCACAGAGACTGTTCAC 525157 Query 181924 CGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCAT 181983 | || ||||| |||||| | || ||||| | | ||||| || || ||||| | |||| Sbjct 525158 CATGATGGTAGGCTGACATTTCGGCAACGGAACCGGCCAATTGGGCAACCTTGACTTCAC 525217 Query 181984 CTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCAT 182043 || ||| | |||||| | |||| || || | ||| ||||||||||||| Sbjct 525218 GCTTATCGTTACGCTTGAAGCACGTGAACATAACCTTTCGCTGACCTGGCTTGAGACCAT 525277 Query 182044 CCGCCATA 182051 || ||||| Sbjct 525278 CCACCATA 525285 Score = 86.0 bits (94), Expect = 8e-12 Identities = 236/360 (66%), Gaps = 9/360 (3%) Strand=Plus/Plus Query 182519 ACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCG 182578 ||| |||||||||||||| || | ||| ||| ||||||||||| || || || || Sbjct 525786 ACCTTTGATGTGAGAACCGTCCTGATCCTGATCAGTCATAATCATGAGCTTTCCGTACCG 525845 Query 182579 AAG----TTCAGAAA---CATCTTGGTAGTCTTTTCCTTGT--TGAAGACCAAGGATCTT 182629 ||| |||||| |||| || | ||| | ||||| || | || | || || Sbjct 525846 AAGAGTTTTCAGATCATCCATCGTGATGTACTTCTTCTTGTACTGCAAGCCGATAATTTT 525905 Query 182630 CTTGAGATCATTGAACTCCTGGTTTGATGTAAGCTGTGCCACCGAAGCGTCCCGAACATT 182689 |||||| |||| || |||| | |||| | || || || ||||| Sbjct 525906 AATGAGATTGTTGATTTCGGCGTTTTCCAGGATCTGTTTGTGGGTGGCTTCTCGCACATT 525965 Query 182690 CTTACATTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACC 182749 ||||||| |||||||||||||||||||| |||||| || || || | || Sbjct 525966 GAGCAATTTACCACGAAGTGGGAACACACCGTACGTATCACGTCCGACAACTCCCAAGCC 526025 Query 182750 CGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTTTCCAGA 182809 | || || | ||||| || || || |||||||| | || |||||||| || || Sbjct 526026 GGACACGGCCAAAGTTTTGGCTGAGTCTCCCTCCGTAAGGATCAGAGTACAATTCAAGGA 526085 Query 182810 TTGTGCCGTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATACCGGTAATTTTGGACTT 182869 | | || ||| || | ||| || || || | |||||| | ||| ||| |||||||| Sbjct 526086 ATTTCTCGAACCAGCATCGTTAGCATCTTCTAGCTTGGGGACACCCTTAACCTTGGACTT 526145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627994655647200