Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq622 134 2e-26 >seq622 Length=114055 Score = 134 bits (148), Expect = 2e-26 Identities = 237/339 (70%), Gaps = 6/339 (2%) Strand=Plus/Plus Query 11796 CGGGTGTATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCACAAAAT 11855 ||| | ||||| ||| | |||| || ||| ||| ||||| ||| | ||||| ||| Sbjct 6329 CGGTTCTATCAGGCAAGTACCTCAGAACTGTATGGAAAAGTCGTTGAAACACCACAGAAT 6388 Query 11856 GAGGAGACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGT-TGCGGCACATTG 11914 ||| ||||||| |||||||||||||| |||| | | | ||| | | ||| | | || Sbjct 6389 GAGAAGACGCCTTTCTATCCACGATCTCCGTATGCCTGCGCCAAGATGTACGG-ATACTG 6447 Query 11915 GCTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAA 11974 | | |||| || || || ||| | || | | ||||| || ||||||||| ||||| Sbjct 6448 GATTGTGATCAACTATCGGGAAGCTTACAATATGTTTGCATGTAATGGTATTCTGTTCAA 6507 Query 11975 CCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCA-CCGAT-GGTATC 12032 |||||||| || ||||| || | |||||||||| | ||| |||| ||||| ||| | Sbjct 6508 TCACGAGTCGCCTCGTCGAGGAGAGAATTTCGTGACCAGGAAAATCACCCGATCGGTGGC 6567 Query 12033 AAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGG 12092 || | ||| | | ||| ||| | | | || |||| || | || | || | Sbjct 6568 GAAAATATC--CCTGAATCAGATGGATTGCCTGGAGCTGGGCAATTTGGACTCAAAGCGT 6625 Query 12093 GACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGG 12131 |||||||| ||||| ||||||| || |||||||||||| Sbjct 6626 GACTGGGGTCATGCTCAGGACTACGTGGAAGCCATGTGG 6664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618398426296920