Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4280 140 4e-28 seq4491 98.7 1e-15 >seq4280 Length=912600 Score = 140 bits (154), Expect = 4e-28 Identities = 567/886 (64%), Gaps = 13/886 (1%) Strand=Plus/Plus Query 104705 TTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGG 104764 |||| ||| || |||||||| ||| | ||||||||| |||| |||| | | | ||| Sbjct 356484 TTCTACGCGCTTTGGATTCCGGATTTGTTCATGAAGCGAGTGGAGGCTAACGAAGACTGG 356543 Query 104765 TCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAA 104824 | | | || || | | ||||| || ||||| | |||||||||||||||| Sbjct 356544 TGCTTGATGTGCCCTCATGAATGTCCTGGGCTATCCGACACATGGGGTGAGGAGTTTGAA 356603 Query 104825 GCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGAT 104884 || |||||| ||||| | ||||| || | | || ||| ||| ||| Sbjct 356604 AAACTGTACACATCATACGAAGCGGAAGGACGATACATTCGGAAAGTGAAAGCCCAAGAT 356663 Query 104885 GTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAA 104944 ||||| || || || |||| ||| || || ||| || |||||||| || || Sbjct 356664 TTGTGGTTTGCAATCATCGAGTCCCAAGTGGAAACCGGTGTTCCGTACATGCTGTATAAG 356723 Query 104945 GACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTC 105004 || || || ||| || |||||||| |||| | || |||||| | || || || Sbjct 356724 GATGCTTGCAACAGGAAAAGTAATCAGCAGAACATCGGAACCATCAAGTGCTCAAACCTT 356783 Query 105005 TGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCA 105064 || || ||||| | |||| | ||| ||||| | ||||| |||||||| || || Sbjct 356784 TGCACCGAAATTGTTGAATACTCCTCCAAGGATGAAATTGCTGTTTGTAACCTAGCGTCC 356843 Query 105065 ATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCAC 105124 ||||| | || || ||| | || || ||||||| ||||| ||||||| | Sbjct 356844 ATCGCATTGAACATGTTCGTGAAACCCGA---CAAGACATATGATTTCCAAAAACTGAAA 356900 Query 105125 GAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCC 105184 ||||| | |||| || ||| || || || |||| | | || || | ||||| || || Sbjct 356901 GAAGTAGCAAAAATTGCCACTAAGAATCTCAACAAAATCATCGACATTAATTTCTATCCA 356960 Query 105185 GT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAG 105241 || ||| | || ||| |||||| | ||||| || || || ||||||| ||| Sbjct 356961 GTGCCAGAGGCCAAGCG---ATCCAATATGCGCCACCGCCCGATCGGAATCGGTGTCCAG 357017 Query 105242 GGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAA 105301 || | || |||| |||||| | || | | | || ||| ||||| | || Sbjct 357018 GGAATGGCCGATGCCTTCATTTTGATGCGTTATCCTTACGACAGCGAAGAAGCTCAAAAA 357077 Query 105302 ATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTG 105361 | ||| || || || || || || || | | || | || || || | || ||| Sbjct 357078 CTGAATCAGCAAATCTTCGAAACTATCTACTATGGTGCCTTAGAAGCAAGCTGTGAATTG 357137 Query 105362 GCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCT 105420 || || || ||| | || ||||||| | ||| | ||| | | |||||| || || Sbjct 357138 GCCGAAAAGGAGGGTACCTACGAAACCTATCCGGGATGTCC-GGTGAGCAAGGGAGTTCT 357196 Query 105421 TCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCA-CTACGACTGGGAAGCTCTCAAGG 105479 || | ||||||||| | ||| |||| || | || |||| || | |||| Sbjct 357197 GCAGTACGATATGTGGAACAAAGAG-CCAACAGACATGTGGGATTGGGCTGCCTTGAAGG 357255 Query 105480 AACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCT 105539 || ||| || | || |||| || || || ||||||| ||||| || || | Sbjct 357256 AAAAGATCGCCAAGCATGGCGTTCGCAATTCCCTGCTTCTGGCTCCGATGCCCACGGCTT 357315 Query 105540 CCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585 | || || ||||| | || || || |||| || ||||| ||||| Sbjct 357316 CGACGGCGCAAATTCTTGGAAACAACGAATCATTCGAACCGTACAC 357361 >seq4491 Length=604133 Score = 98.7 bits (108), Expect = 1e-15 Identities = 172/247 (70%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 168458 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 168517 ||||||||||| ||||| ||||| |||||||||| ||| |||| |||||||| ||| Sbjct 525040 TCCTTACCACCGGCAAGACGAGTACCGAACTGACCACTCGGGACAAGCAGATTGATGTTG 525099 Query 168518 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGAC--TTCAC 168575 || || | || | | |||| |||||||| || |||| | |||||| ||||| Sbjct 525100 TTACTTCCGACATAATTTTGAGCCAGATTGACAATGGT-ACCGC-ACAGAGACTGTTCAC 525157 Query 168576 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 168635 | || ||||| || | | || || || | | ||||| || || || || | ||| Sbjct 525158 CATGATGGTAGGCTGACATTTCGGCAACGGAACCGGCCAATTGGGCAACCTTGACTTCAC 525217 Query 168636 CCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 168695 ||| || | |||||| | | |||||||||| || || ||||||||||||| Sbjct 525218 GCTTATCGTTACGCTTGAAGCACGTGAACATAACCTTTCGCTGACCTGGCTTGAGACCAT 525277 Query 168696 CCGCCAT 168702 || |||| Sbjct 525278 CCACCAT 525284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583226117854680