Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4491 132 5e-26 seq622 111 2e-19 seq4284 87.8 2e-12 >seq4491 Length=604133 Score = 132 bits (146), Expect = 5e-26 Identities = 207/296 (70%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| || ||| ||||| ||||| |||||||| |||||||| || Sbjct 525013 GTGAAAATGTAACGAGGACTGGCACTGTCCTTACCACCGGCAAGACGAGTACCGAACTGA 525072 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 |||||||| | | || || | |||||| || ||| | |||||||||| |||||| Sbjct 525073 CCACTCGGGACAAGCAGATTGATGTTGTTACTTCCGACATAATTTTGAGCCAGATTGACA 525132 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || ||||| || | |||||||| || || || | | || || ||| | || Sbjct 525133 ATGGTACCGCACAGAGACTGTTCACCATGATGGTAGGCTGACATTTCGGCAACGGAACCG 525192 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 |||| || || ||||| | || | | ||| ||||| ||| | | || ||| Sbjct 525193 GCCAATTGGGCAACCTTGACTTCACGCTTATCGTTACGCTTGAAGCACGTGAACATAACC 525252 Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600 || ||||||| |||||| ||||||||| ||| || |||||||| || |||| Sbjct 525253 TTTCGCTGACCTGGCTTGAGACCATCCACCATACACGGAATCGAACGGATGTTGTC 525308 Score = 91.5 bits (100), Expect = 2e-13 Identities = 220/333 (66%), Gaps = 0/333 (0%) Strand=Plus/Plus Query 151992 CGGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGC 152051 ||| | ||| ||| ||||||| ||| ||| ||||| ||||| || | ||||| Sbjct 524976 CGGGTGGAAGATCAACCGAGTCAACGGAGACAACATGGTGAAAATGTAACGAGGACTGGC 525035 Query 152052 CGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAG 152111 ||||| ||||| || || || || || ||||| ||| || | || || |||| Sbjct 525036 ACTGTCCTTACCACCGGCAAGACGAGTACCGAACTGACCACTCGGGACAAGCAGATTGAT 525095 Query 152112 GTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTC 152171 |||||| || || |||| ||||||| ||| ||||| || || |||| | ||| Sbjct 525096 GTTGTTACTTCCGACATAATTTTGAGCCAGATTGACAATGGTACCGCACAGAGACTGTTC 525155 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231 ||| || || || || | | || || | | | || ||||| || || ||||| | || Sbjct 525156 ACCATGATGGTAGGCTGACATTTCGGCAACGGAACCGGCCAATTGGGCAACCTTGACTTC 525215 Query 152232 CGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACC 152291 | | ||| ||||| || | | | || ||||| ||||| ||| || | ||| Sbjct 525216 ACGCTTATCGTTACGCTTGAAGCACGTGAACATAACCTTTCGCTGACCTGGCTTGAGACC 525275 Query 152292 GTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||||| ||||||||||| || |||| Sbjct 525276 ATCCACCATACACGGAATCGAACGGATGTTGTC 525308 >seq622 Length=114055 Score = 111 bits (122), Expect = 2e-19 Identities = 263/393 (67%), Gaps = 21/393 (5%) Strand=Plus/Minus Query 158964 CTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCACATGGC 159023 ||| ||||| ||||| || |||| | || ||||||||| | ||| | ||||||||| Sbjct 6715 CTCGCCAGTGGCAATTACGTAGTCTTGAGGCTGGGGCTGTTGCAACATCATCCACATGGC 6656 Query 159024 CTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAGCTCGAT 159083 || ||||| ||||| || ||||||||||| ||||| | |||| || || ||||| | Sbjct 6655 TTCCACGTAGTCCTGAGCATGACCCCAGTCACGCTTTGAGTCCAAATTGCCCAGCTCCAG 6596 Query 159084 G-------ACTTTTCCA--GACTTTTTCCACTCAGCCAGACCGA--GCGTGATCTTGCGC 159132 | || | || || ||||| ||| ||||| | ||||| || | Sbjct 6595 GCAATCCATCTGATTCAGGGATATTTTC------GCC--ACCGATCGGGTGATTTTCCTG 6544 Query 159133 GTCAC-AAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGC 159191 ||||| ||| ||| |||| || || |||||| || || |||||||| || |||| || Sbjct 6543 GTCACGAAATTCT-CTCCTCGACGAGGCGACTCGTGATTGAACAGAATACCATTACATGC 6485 Query 159192 GAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGGAGAC 159251 |||| || || | || || || || | ||||||||||| | | ||||| | Sbjct 6484 AAACATATTGTAAGCTTCCCGATAGTTGATCACAATCCAGTATCCGTACATCTTGGCGCA 6425 Query 159252 GCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTGAATTGGTTCCTGAACCTT 159311 | | || ||| || ||||| || || ||| |||||| || || ||| || || Sbjct 6424 GGCATACGGAGATCGTGGATAGAAAGGCGTCTTCTCATTCTGTGGTGTTTCAACGACTTT 6365 Query 159312 TCCAAACATTTCACTCGTCCCAGCCTGATAAAA 159344 |||| ||| ||| || | |||||||| || Sbjct 6364 TCCATACAGTTCTGAGGTACTTGCCTGATAGAA 6332 >seq4284 Length=891408 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 ||||| ||| ||| |||||| || | |||||||| || || || | || ||| Sbjct 85365 GCAAAGTCCGTGTGCAGGCCTTCGTCACGTGAGATCAATTCGTTGGAGAATGTTAGCCCA 85306 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| |||||||||||||||||||||||||||| ||| ||||| ||||| || Sbjct 85305 GGCATCAGTCCACGCTTCTTCAACCAAAAGATGGATGCGAAACTTCCACTAAAGAAAATA 85246 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTT 74901 ||||| || || ||||| || | ||||| Sbjct 85245 CCTTCCACGGCGGCGAAGGCTACGACGCGTT 85215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547183461168600