Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq810 104 9e-18 >seq810 Length=78467 Score = 104 bits (114), Expect = 9e-18 Identities = 716/1130 (63%), Gaps = 44/1130 (4%) Strand=Plus/Plus Query 2592 TTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTTTTCCAG 2651 ||||| |||| |||||| || || |||||||| || || | ||| | |||||| Sbjct 43949 TTGTTGAACCATGACACCCATTCCAGGGTTGCCAGTTCGACGGCTTCCCGGGTCTTCCAG 44008 Query 2652 CTCTTACGG---TGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCCATCGCG 2708 | ||| || || | ||| || ||||| || || ||||| |||| |||| ||| Sbjct 44009 GGCGCCCGGCGATGGATCAACTCGGCCTTGTACAGCCCGTTGATCGTCTCGGCCAGGGCG 44068 Query 2709 TTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTTAGTCGC 2768 |||||||| |||||||| | || ||| || | | ||||| || || ||| Sbjct 44069 TTGTCATAGGAGTCGCCCTTGCTGCCTACCGAAGGTTCGATGCCGGCCTCGGCCAGCCGC 44128 Query 2769 TCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGAT--------GGATGG 2820 || || ||| | || || || || || | ||| |||| ||| | Sbjct 44129 TCGGTGTAGCGGATGCTGACGTATTGCGATCCCCTGTCGGAGTGACACACGAGCGGACCG 44188 Query 2821 TGC-CAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT 2879 ||| || || | || || |||| ||||||||||| ||||| |||||||| ||| Sbjct 44189 TGCGCACCAGGCTGCCGAGCGTACAAGGCCTGCTCCAGAGCATCGAGCACGAA-GTCCAC 44247 Query 2880 TC-CATAGACGATG-AGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATAA 2937 | ||| | | || |||||||| ||||||||| | | ||||| || || | | Sbjct 44248 CCGCAT-GCTGGTGCTCACCCGCCAGCCCACGATGCGCCGCGAGAACACGTCGATCACGA 44306 Query 2938 ACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCT 2997 | ||||| || | |||||||||| || |||||| || || || |||||||| || Sbjct 44307 AGGCCACGTACAGCCAGCCCTGCCAGGTCGAGACGTATGTGAAGTCGCTCACCCACAACT 44366 Query 2998 GGTCAGGTCGTTCTGC-CAC-GAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTT 3055 ||| || || |||| ||| |||||| ||||| || ||| ||||||| | ||| Sbjct 44367 GGTTCGGGCG--CTGCGCACTGAACTGCCGGTTGACCAGGT--CCTGCGGGCATGGCGCC 44422 Query 3056 C-CG----GCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACC-GGCAAGTCCCAT 3109 | || || ||| || || || | | || || || | ||| || |||| ||||| Sbjct 44423 CGCGCATCGCCGATCGTTGTGCGCATCACCTTGCCGCGCACAACGCCACGCAA-CCCCAT 44481 Query 3110 AACCGC-CATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTTCCCGTAACAACT 3168 | || ||| || || |||| || || | ||||| | | ||||| ||| || | Sbjct 44482 -GCGGCGCATCAGGCGCTCCACGGTGCAGCGCGCCACGCGCACGCCTTCACGTTGCAGTT 44540 Query 3169 GACGCCAGACTTTACGCACACCGTACACCTGATGATTTTCATCGTATACGCGCTGTATCT 3228 | |||||||| || | ||||| ||| | | || | | | || | || || | Sbjct 44541 GTCGCCAGACCTTGTCGGCCCCGTAGACCCGCAGGTTGGCCTGCCACACCCTCTCGATGT 44600 Query 3229 CTCTCTTCAGCCAGTCGTCGTGCTGCGCACGGGCACTGCGTTTATCCGGAT---GATGTC 3285 | |||| | ||| |||| || ||| | ||| | | | || | || | Sbjct 44601 GGGGCATCAGTTCCTGGTCTCGCTGGGCTCGGCCGCTGAGCAAGGCAGCATCGCGCTGCC 44660 Query 3286 -GCTGTTGCTGACAATGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATACCGGT 3344 |||| | || | || |||| ||| ||||| || ||||| ||||| | ||| Sbjct 44661 GGCTGGCG-TGCCGCCGG---TACGCTGATGGGGCGATCTGCAGCAGCCTGCAGATCGGC 44716 Query 3345 CCGACCCCGTACTGCTCACGCAGCTTATCCAGCAGTGGCAT-CATTTTTTCCAGAGGCGG 3403 ||||||| | ||||| || || |||| || ||| | ||| ||| ||||| Sbjct 44717 TCGACCCCATGCTGCTGGCGGTGCCGGTCCA-CAAAGGCGTACATCACTTCAGCCGGCGG 44775 Query 3404 TCGAACTCCGCCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGC 3463 |||| |||||||| || ||| | ||| ||| | ||||| ||||| ||||| Sbjct 44776 TCGAGCTCCGCCTGGGCGAAAAACGCGCTGGCCAGCTTGAGGATCTCGTTGGCACGGCGA 44835 Query 3464 AGTTCACGATTTTCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGAGCCCA 3523 || || || ||| || ||||| || || | |||| || || |||| | | Sbjct 44836 AGCTCGCGCACTTCGCGCTCCAGTTCCTTGACGCGCTTGGCCTCGGCCGTGGT---CACG 44892 Query 3524 CCATCACCGCCCCCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGC 3583 || || | || || || ||||| ||||| || |||||| |||| |||| ||| Sbjct 44893 CCTTCGCGCTGGCCCGTGTCACGCTCGTGCTGACGCACCCAGTTCAGCAGCGTCTGTGGC 44952 Query 3584 GTACAGCCAATCTTTGGGGCAATGGAACAAATTGCCGCCCACTGTGAGTCATATTCATCC 3643 || | ||| ||||| ||| || || | ||||||||||| || || || || | Sbjct 44953 GTGCTGCCGATCTTGCCGGCGATCGACACGACCGCCGCCCACTGCGATTCGTACTCTGCT 45012 Query 3644 TGACTTTCCAGAACCATACGAATCGCCCGCTGACGGACTTCGGGGGAAAA 3693 | || | ||||| || | ||| |||| ||| || | || ||||| Sbjct 45013 CGGTGCTCGAACACCATGCGCACCGCACGCTCACGAACCTGCGGCGAAAA 45062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203284213723810