Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq810 104 1e-17 >seq810 Length=78467 Score = 104 bits (114), Expect = 1e-17 Identities = 716/1130 (63%), Gaps = 44/1130 (4%) Strand=Plus/Plus Query 33040 TTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTTTTCCAG 33099 ||||| |||| |||||| || || |||||||| || || | ||| | |||||| Sbjct 43949 TTGTTGAACCATGACACCCATTCCAGGGTTGCCAGTTCGACGGCTTCCCGGGTCTTCCAG 44008 Query 33100 CTCTTACGG---TGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCCATCGCG 33156 | ||| || || | ||| || ||||| || || ||||| |||| |||| ||| Sbjct 44009 GGCGCCCGGCGATGGATCAACTCGGCCTTGTACAGCCCGTTGATCGTCTCGGCCAGGGCG 44068 Query 33157 TTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTTAGTCGC 33216 |||||||| |||||||| | || ||| || | | ||||| || || ||| Sbjct 44069 TTGTCATAGGAGTCGCCCTTGCTGCCTACCGAAGGTTCGATGCCGGCCTCGGCCAGCCGC 44128 Query 33217 TCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGAT--------GGATGG 33268 || || ||| | || || || || || | ||| |||| ||| | Sbjct 44129 TCGGTGTAGCGGATGCTGACGTATTGCGATCCCCTGTCGGAGTGACACACGAGCGGACCG 44188 Query 33269 TGC-CAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT 33327 ||| || || | || || |||| ||||||||||| ||||| |||||||| ||| Sbjct 44189 TGCGCACCAGGCTGCCGAGCGTACAAGGCCTGCTCCAGAGCATCGAGCACGAA-GTCCAC 44247 Query 33328 TC-CATAGACGATG-AGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATAA 33385 | ||| | | || |||||||| ||||||||| | | ||||| || || | | Sbjct 44248 CCGCAT-GCTGGTGCTCACCCGCCAGCCCACGATGCGCCGCGAGAACACGTCGATCACGA 44306 Query 33386 ACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCT 33445 | ||||| || | |||||||||| || |||||| || || || |||||||| || Sbjct 44307 AGGCCACGTACAGCCAGCCCTGCCAGGTCGAGACGTATGTGAAGTCGCTCACCCACAACT 44366 Query 33446 GGTCAGGTCGTTCTGC-CAC-GAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTT 33503 ||| || || |||| ||| |||||| ||||| || ||| ||||||| | ||| Sbjct 44367 GGTTCGGGCG--CTGCGCACTGAACTGCCGGTTGACCAGGT--CCTGCGGGCATGGCGCC 44422 Query 33504 C-CG----GCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACC-GGCAAGTCCCAT 33557 | || || ||| || || || | | || || || | ||| || |||| ||||| Sbjct 44423 CGCGCATCGCCGATCGTTGTGCGCATCACCTTGCCGCGCACAACGCCACGCAA-CCCCAT 44481 Query 33558 AACCGC-CATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTTCCCGTAACAACT 33616 | || ||| || || |||| || || | ||||| | | ||||| ||| || | Sbjct 44482 -GCGGCGCATCAGGCGCTCCACGGTGCAGCGCGCCACGCGCACGCCTTCACGTTGCAGTT 44540 Query 33617 GACGCCAGACTTTACGCACACCGTACACCTGATGATTTTCATCGTATACGCGCTGTATCT 33676 | |||||||| || | ||||| ||| | | || | | | || | || || | Sbjct 44541 GTCGCCAGACCTTGTCGGCCCCGTAGACCCGCAGGTTGGCCTGCCACACCCTCTCGATGT 44600 Query 33677 CTCTCTTCAGCCAGTCGTCGTGCTGCGCACGGGCACTGCGTTTATCCGGAT---GATGTC 33733 | |||| | ||| |||| || ||| | ||| | | | || | || | Sbjct 44601 GGGGCATCAGTTCCTGGTCTCGCTGGGCTCGGCCGCTGAGCAAGGCAGCATCGCGCTGCC 44660 Query 33734 -GCTGTTGCTGACAATGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATACCGGT 33792 |||| | || | || |||| ||| ||||| || ||||| ||||| | ||| Sbjct 44661 GGCTGGCG-TGCCGCCGG---TACGCTGATGGGGCGATCTGCAGCAGCCTGCAGATCGGC 44716 Query 33793 CCGACCCCGTACTGCTCACGCAGCTTATCCAGCAGTGGCAT-CATTTTTTCCAGAGGCGG 33851 ||||||| | ||||| || || |||| || ||| | ||| ||| ||||| Sbjct 44717 TCGACCCCATGCTGCTGGCGGTGCCGGTCCA-CAAAGGCGTACATCACTTCAGCCGGCGG 44775 Query 33852 TCGAACTCCGCCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGC 33911 |||| |||||||| || ||| | ||| ||| | ||||| ||||| ||||| Sbjct 44776 TCGAGCTCCGCCTGGGCGAAAAACGCGCTGGCCAGCTTGAGGATCTCGTTGGCACGGCGA 44835 Query 33912 AGTTCACGATTTTCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGAGCCCA 33971 || || || ||| || ||||| || || | |||| || || |||| | | Sbjct 44836 AGCTCGCGCACTTCGCGCTCCAGTTCCTTGACGCGCTTGGCCTCGGCCGTGGT---CACG 44892 Query 33972 CCATCACCGCCCCCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGC 34031 || || | || || || ||||| ||||| || |||||| |||| |||| ||| Sbjct 44893 CCTTCGCGCTGGCCCGTGTCACGCTCGTGCTGACGCACCCAGTTCAGCAGCGTCTGTGGC 44952 Query 34032 GTACAGCCAATCTTTGGGGCAATGGAACAAATTGCCGCCCACTGTGAGTCATATTCATCC 34091 || | ||| ||||| ||| || || | ||||||||||| || || || || | Sbjct 44953 GTGCTGCCGATCTTGCCGGCGATCGACACGACCGCCGCCCACTGCGATTCGTACTCTGCT 45012 Query 34092 TGACTTTCCAGAACCATACGAATCGCCCGCTGACGGACTTCGGGGGAAAA 34141 | || | ||||| || | ||| |||| ||| || | || ||||| Sbjct 45013 CGGTGCTCGAACACCATGCGCACCGCACGCTCACGAACCTGCGGCGAAAA 45062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210918971065932